PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01148.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 375aa    MW: 42670.6 Da    PI: 8.7436
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01148.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.84.9e-077597123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C+ Cg++F+ +s+Lk+H+++H
  Pahal.C01148.1 75 HDCKECGMRFKKPSHLKQHMQSH 97
                    56*******************99 PP
2zf-C2H219.23.3e-06103127123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     + C+   C+ s+srk++L+rH+ tH
  Pahal.C01148.1 103 FACHvdGCPLSYSRKDHLNRHLLTH 127
                     78*********************99 PP
3zf-C2H214.69.3e-05132157123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     ++Cp   C++ F+ k n++rH +  H
  Pahal.C01148.1 132 FVCPieGCDRKFNIKGNMQRHVQEmH 157
                     89*******************99877 PP
4zf-C2H220.81e-06169193123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     + Cp  +Cgk+F+  s Lk+H  +H
  Pahal.C01148.1 169 FICPevNCGKTFKYASKLKKHEESH 193
                     78*******************9988 PP
5zf-C2H216.52.5e-05260284223
                     EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     kC   dC+ sFs ksnL++H +  H
  Pahal.C01148.1 260 KCRfeDCKCSFSKKSNLEKHVKAvH 284
                     68888***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.5382957IPR007087Zinc finger, C2H2
SMARTSM00355122952IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.31675102IPR007087Zinc finger, C2H2
SMARTSM003550.00417597IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.3E-67594IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SuperFamilySSF576672.32E-1188129No hitNo description
Gene3DG3DSA:3.30.160.602.6E-1495129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0053103127IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328103132IPR007087Zinc finger, C2H2
PROSITE patternPS000280105127IPR007087Zinc finger, C2H2
SuperFamilySSF576679.31E-7113163No hitNo description
Gene3DG3DSA:3.30.160.605.1E-8130158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.533132162IPR007087Zinc finger, C2H2
SMARTSM003551.9E-4132157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134157IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-6165193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.34E-5166195No hitNo description
SMARTSM003550.0032169193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.281169193IPR007087Zinc finger, C2H2
PROSITE patternPS000280171193IPR007087Zinc finger, C2H2
SMARTSM003557.3201226IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280203226IPR007087Zinc finger, C2H2
SMARTSM0035515229250IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.39E-6240297No hitNo description
SMARTSM003550.041259284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03259289IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-4259284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280261284IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-6285312IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.9290316IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.016290319IPR007087Zinc finger, C2H2
PROSITE patternPS000280292316IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGDGEETGCG DGATTAARAG APLRDIRRYK CEFCGVVRSK KSLIRAHVLQ NHKDEVDGLE  60
DYQEGGDGAS RKVSHDCKEC GMRFKKPSHL KQHMQSHSLE RPFACHVDGC PLSYSRKDHL  120
NRHLLTHQGK LFVCPIEGCD RKFNIKGNMQ RHVQEMHKDG SPCESKKEFI CPEVNCGKTF  180
KYASKLKKHE ESHVKLDYTE VICCEPGCMK TFTDVECLKA HNQSCHQHVQ CDVCGTKQLK  240
RNFKRHRQMH EGSCITERVK CRFEDCKCSF SKKSNLEKHV KAVHEQRRPF VCQFSGCGKK  300
FSYKHVRDIH EKSSAHVHTE GDFVEADEQR PRSAGGRKRK PVSVETFMRK RVAAPDDAPA  360
HVDGTEYLRW LLSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A1e-177922319157PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D1e-177922319157PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805294.10.0transcription factor IIIA-like
RefseqXP_025805295.10.0transcription factor IIIA-like
SwissprotQ84MZ41e-117TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2S3H7J20.0A0A2S3H7J2_9POAL; Uncharacterized protein
STRINGPavir.J02126.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-118transcription factor IIIA