PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C01141.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WOX | ||||||||
Protein Properties | Length: 262aa MW: 27562.2 Da PI: 7.5495 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.6 | 1.4e-20 | 17 | 76 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Lee+++ r+psa+++++++++l +++ ++V++WFqN++a++++ Pahal.C01141.1 17 TRWCPTPEQLMILEEMYRGgLRTPSASQIQQITAHLacygRIEGKNVFYWFQNHKARDRQ 76 8*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 117.5 | 6.1e-38 | 16 | 77 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +tRW+PtpeQ++iLee+y+ GlrtP++++iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk Pahal.C01141.1 16 STRWCPTPEQLMILEEMYRGGLRTPSASQIQQITAHLACYGRIEGKNVFYWFQNHKARDRQK 77 79***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.4E-4 | 14 | 81 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.41E-5 | 17 | 77 | No hit | No description |
Pfam | PF00046 | 3.1E-18 | 17 | 76 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.2E-10 | 17 | 77 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-7 | 18 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.944 | 22 | 77 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MPSQQDQPQQ PVVAGSTRWC PTPEQLMILE EMYRGGLRTP SASQIQQITA HLACYGRIEG 60 KNVFYWFQNH KARDRQKLRR RLCMSHHLLS CAQYYAAAHH GHGHGFLAAP PAAPYGCSVF 120 DQAAASQLLS PTSPTPAAAA AAAAAAAAYG YYYPATAAFA AAPASRCAGA ATPPSPTQLF 180 HYQAGGGGIA PVEALGRPEY SLGKLDNFGV ALDDVVMSSA AAVDMGPPGF EVAPPPAAFC 240 RPLKTLDLFP GGLKEEQHDV A* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040184 | 1e-134 | BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds. | |||
GenBank | KJ726946 | 1e-134 | KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809937.1 | 0.0 | putative WUSCHEL-related homeobox 2 | ||||
TrEMBL | A0A2S3H7H4 | 0.0 | A0A2S3H7H4_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7E7F4 | 0.0 | A0A2T7E7F4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J22602.1.p | 1e-145 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2177 | 38 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 3e-40 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C01141.1 |