PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01019.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 373aa    MW: 41697.3 Da    PI: 7.9403
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01019.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002688110323
                     ET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                     C+  +Cgk+F + s L++H  +H
  Pahal.C01019.1  88 CSyeNCGKTFVDVSALRKHAHVH 110
                     77779**************9887 PP
2zf-C2H220.41.4e-06115139123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y C+  +Cgk F ++s LkrH  tH
  Pahal.C01019.1 115 YICNepNCGKKFVDSSKLKRHYLTH 139
                     899999****************999 PP
3zf-C2H2201.8e-06145169123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++Cp   Cgk Fs   nL++H++tH
  Pahal.C01019.1 145 FVCPhpGCGKAFSLDFNLRSHLKTH 169
                     89**********************9 PP
4zf-C2H216.62.2e-05175199123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     + Cp   Cgk+F++ s L++H ++H
  Pahal.C01019.1 175 HICPfpACGKRFTSDSKLRVHVKSH 199
                     5799999****************99 PP
5zf-C2H217.21.4e-05236261123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     y+Cp   C+k + +++ L+ H++t H
  Pahal.C01019.1 236 YVCPyeGCDKAYIHSYKLNLHLKTqH 261
                     99*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.1E-1381109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01386110IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.84386115IPR007087Zinc finger, C2H2
PROSITE patternPS00028088110IPR007087Zinc finger, C2H2
SuperFamilySSF576676.92E-989139No hitNo description
Gene3DG3DSA:3.30.160.609.9E-14110135IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.295115144IPR007087Zinc finger, C2H2
SMARTSM003550.0013115139IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117139IPR007087Zinc finger, C2H2
SuperFamilySSF576672.5E-12126178No hitNo description
Gene3DG3DSA:3.30.160.604.6E-19136170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.3E-4145169IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.926145174IPR007087Zinc finger, C2H2
PROSITE patternPS000280147169IPR007087Zinc finger, C2H2
SuperFamilySSF576676.28E-5169200No hitNo description
Gene3DG3DSA:3.30.160.608.8E-9173199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.616175204IPR007087Zinc finger, C2H2
SMARTSM003550.0032175199IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280177199IPR007087Zinc finger, C2H2
SuperFamilySSF576671.38E-6229261No hitNo description
Gene3DG3DSA:3.30.160.604.7E-10232261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0036236261IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452236269IPR007087Zinc finger, C2H2
PROSITE patternPS000280238261IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEYPAAAAGS GGYKYYYPPQ PQPVRRPPRP AARWVKQWIP LDLASSGGKC SLFKWVREDG  60
HRSSKENPKV LEAEAPKPEP TTEILFLCSY ENCGKTFVDV SALRKHAHVH NEKQYICNEP  120
NCGKKFVDSS KLKRHYLTHT GQKDFVCPHP GCGKAFSLDF NLRSHLKTHA LENYHICPFP  180
ACGKRFTSDS KLRVHVKSHE KTGTPVAVQH TPPVEKPHSA PKPSTPATTS YADRPYVCPY  240
EGCDKAYIHS YKLNLHLKTQ HPEHSQEENG KLGASGQHGV NETTYQYSYA EVGDTAPNPK  300
RSKSHKVHSS KVYNAKISTV MPSNISGVKN QWSGKATYED DSEETEEDGG NNIEDGWRYG  360
NNADDEETQD ED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C3e-33882018119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0371600.0BT037160.1 Zea mays full-length cDNA clone ZM_BFb0157B04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809834.10.0zinc finger transcription factor YY1-like
SwissprotQ2V3L31e-105YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A2S3H7B20.0A0A2S3H7B2_9POAL; Uncharacterized protein
STRINGSi022363m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.13e-98C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]