PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00838.5
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 587aa    MW: 64468.8 Da    PI: 8.7553
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00838.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.1e-14432477454
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+iLe Av +I +L
  Pahal.C00838.5 432 SHVEAERQRREKLNKRFCALRAIVPNiS------KMDKASILEDAVTHITDL 477
                     799***********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.4E-4845234IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.01E-17425490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-15426482No hitNo description
PROSITE profilePS5088817.053428477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-17432491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-12432477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-14434483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MHSLWKEKGS AFLQQRYFCF QIVRQCTDED RDQGGLVAAS VLADLQSKLH NLVEADGQSL  60
RWNYAIFWQL ARTKSGAVVL GWGDGSCREP HDGEIGFATS VGAGDASSVT RQRVRKRVLQ  120
RLHTAFAGAD EEDYAPGIDQ VTDTEIFFLA SMYFSFPRHV GGPGKVFAAG KPLWIPNNDL  180
KVFPANYCYR GFLANAAGFK TIVLVPFKAG VLEVGSIQNV SESAEALQTI RSLFLGTHST  240
STASEKHEDN ISVQISPGST KIFGKDLSIS QPSAIKAADP SKVDGGSRDE QKSSGGDCML  300
LPNLRKGLQN FTWSQARGLN SHQQKFGNGI LVVTSETKQI GDGSAPSTGV SSFQLQKPQQ  360
ILTQQPLQPR GPMQIDFRVG SSSKFGVLIS QKAMLDGGNG DIDGLFKDER EDRQPRKRER  420
KSTNGREEQP LSHVEAERQR REKLNKRFCA LRAIVPNISK MDKASILEDA VTHITDLKKK  480
LEKMEAEREK LLELGKVDTD EQTTRPDVDI QVAHGEVLVR VVSQIDNHPI KKVLQAFEEA  540
EVKIGESKVT SNDGTVVHSF VIKSPSSEQH TRNKLLASIS NAARSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-23452349192Transcription factor MYC3
4rqw_B3e-23452349192Transcription factor MYC3
4rs9_A3e-23452349192Transcription factor MYC3
4yz6_A3e-23452349192Transcription factor MYC3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805866.10.0transcription factor bHLH13-like
RefseqXP_025805867.10.0transcription factor bHLH13-like
RefseqXP_025805868.10.0transcription factor bHLH13-like
TrEMBLA0A2S3H6T60.0A0A2S3H6T6_9POAL; Uncharacterized protein
STRINGSi021549m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-56bHLH family protein