PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00838.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 436aa    MW: 47734.1 Da    PI: 9.8923
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00838.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14281326454
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+iLe Av +I +L
  Pahal.C00838.4 281 SHVEAERQRREKLNKRFCALRAIVPNiS------KMDKASILEDAVTHITDL 326
                     799***********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.0E-20183IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.54E-18274339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.28E-15275331No hitNo description
PROSITE profilePS5088817.053277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-18281340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-12281326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-14283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MYFSFPRHVG GPGKVFAAGK PLWIPNNDLK VFPANYCYRG FLANAAGFKT IVLVPFKAGV  60
LEVGSIQNVS ESAEALQTIR SLFLGTHSTS TASEKHEDNI SVQISPGSTK IFGKDLSISQ  120
PSAIKAADPS KVDGGSRDEQ KSSGGDCMLL PNLRKGLQNF TWSQARGLNS HQQKFGNGIL  180
VVTSETKQIG DGSAPSTGVS SFQLQKPQQI LTQQPLQPRG PMQIDFRVGS SSKFGVLISQ  240
KAMLDGGNGD IDGLFKDERE DRQPRKRERK STNGREEQPL SHVEAERQRR EKLNKRFCAL  300
RAIVPNISKM DKASILEDAV THITDLKKKL EKMEAEREKL LELGKVDTDE QTTRPDVDIQ  360
VAHGEVLVRV VSQIDNHPIK KVLQAFEEAE VKIGESKVTS NDGTVVHSFV IKSPSSEQHT  420
RNKLLASISN AARSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-22274337264Transcription factor MYC2
5gnj_B4e-22274337264Transcription factor MYC2
5gnj_E4e-22274337264Transcription factor MYC2
5gnj_F4e-22274337264Transcription factor MYC2
5gnj_G4e-22274337264Transcription factor MYC2
5gnj_I4e-22274337264Transcription factor MYC2
5gnj_M4e-22274337264Transcription factor MYC2
5gnj_N4e-22274337264Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805866.10.0transcription factor bHLH13-like
RefseqXP_025805867.10.0transcription factor bHLH13-like
RefseqXP_025805868.10.0transcription factor bHLH13-like
TrEMBLA0A2S3H6X80.0A0A2S3H6X8_9POAL; Uncharacterized protein
STRINGPavir.Cb01851.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.16e-46ABA-inducible BHLH-type transcription factor