PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00838.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 596aa    MW: 64971.5 Da    PI: 8.1525
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00838.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.2e-14441486454
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+iLe Av +I +L
  Pahal.C00838.2 441 SHVEAERQRREKLNKRFCALRAIVPNiS------KMDKASILEDAVTHITDL 486
                     799***********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.6E-4854243IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.03E-17434499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.23E-16435491No hitNo description
PROSITE profilePS5088817.053437486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-17441500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-12441486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-14443492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MKTEIKEVSI GGFWNEEDKV LCASVLGLDA FTYLTKCGGA ISEGLVAASV LADLQSKLHN  60
LVEADGQSLR WNYAIFWQLA RTKSGAVVLG WGDGSCREPH DGEIGFATSV GAGDASSVTR  120
QRVRKRVLQR LHTAFAGADE EDYAPGIDQV TDTEIFFLAS MYFSFPRHVG GPGKVFAAGK  180
PLWIPNNDLK VFPANYCYRG FLANAAGFKT IVLVPFKAGV LEVGSIQNVS ESAEALQTIR  240
SLFLGTHSTS TASEKHEDNI SVQISPGSTK IFGKDLSISQ PSAIKAADPS KVDGGSRDEQ  300
KSSGGDCMLL PNLRKGLQNF TWSQARGLNS HQQKFGNGIL VVTSETKQIG DGSAPSTGVS  360
SFQLQKPQQI LTQQPLQPRG PMQIDFRVGS SSKFGVLISQ KAMLDGGNGD IDGLFKDERE  420
DRQPRKRERK STNGREEQPL SHVEAERQRR EKLNKRFCAL RAIVPNISKM DKASILEDAV  480
THITDLKKKL EKMEAEREKL LELGKVDTDE QTTRPDVDIQ VAHGEVLVRV VSQIDNHPIK  540
KVLQAFEEAE VKIGESKVTS NDGTVVHSFV IKSPSSEQHT RNKLLASISN AARSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-23542439192Transcription factor MYC3
4rqw_B4e-23542439192Transcription factor MYC3
4rs9_A4e-23542439192Transcription factor MYC3
4yz6_A4e-23542439192Transcription factor MYC3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805866.10.0transcription factor bHLH13-like
RefseqXP_025805867.10.0transcription factor bHLH13-like
RefseqXP_025805868.10.0transcription factor bHLH13-like
TrEMBLA0A2S3H6X80.0A0A2S3H6X8_9POAL; Uncharacterized protein
STRINGSi021549m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.38e-64bHLH family protein