PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.C00591.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 165aa MW: 18653.4 Da PI: 9.9873 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 41 | 88 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++lv +++ +G g+W++ ++ + + R++k+c++rw +yl Pahal.C00591.1 41 KGAWTMEEDQRLVAYIRAHGEGSWRSLPKAVSLQRCGKSCRLRWINYL 88 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.3 | 7.5e-18 | 94 | 138 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEd+++++++ +lG++ W+ Ia +++ gRt++++k++w+++ Pahal.C00591.1 94 RGNFTEEEDDIIIKLHGLLGNK-WSQIAGRLP-GRTDNEIKNYWNTH 138 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-24 | 32 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.973 | 36 | 88 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-30 | 40 | 135 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-10 | 40 | 90 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 41 | 88 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-8 | 43 | 88 | No hit | No description |
PROSITE profile | PS51294 | 28.377 | 89 | 143 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-28 | 92 | 143 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.9E-17 | 93 | 141 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-16 | 94 | 138 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.42E-12 | 96 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 165 aa Download sequence Send to blast |
MRLYPPLLRG MLTSTGLAKC CDRETSDMGR SPCCEKAHTN KGAWTMEEDQ RLVAYIRAHG 60 EGSWRSLPKA VSLQRCGKSC RLRWINYLRP DLKRGNFTEE EDDIIIKLHG LLGNKWSQIA 120 GRLPGRTDNE IKNYWNTHIK RKLLARGIDP QTHRALAASS STCS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-32 | 41 | 143 | 7 | 108 | B-MYB |
1h8a_C | 1e-31 | 40 | 143 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT069656 | 1e-118 | BT069656.1 Zea mays full-length cDNA clone ZM_BFb0205E08 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807182.1 | 1e-98 | myb-related protein 330-like | ||||
Swissprot | P81393 | 1e-82 | MYB08_ANTMA; Myb-related protein 308 | ||||
Swissprot | P81395 | 2e-82 | MYB30_ANTMA; Myb-related protein 330 | ||||
TrEMBL | A0A2T8KH86 | 3e-97 | A0A2T8KH86_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J00442.1.p | 1e-87 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-84 | myb domain protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.C00591.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|