PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00552.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 395aa    MW: 42659 Da    PI: 11.0848
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00552.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA39.11e-1277111135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+ Cg+++T++WR+gp g++tL n CG++ r+ g+
  Pahal.C00552.1  77 CQDCGAIETAQWRSGPLGPRTLYNNCGVRRRLAGE 111
                     *******************************9886 PP
2GATA35.41.5e-11236270135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +Cg+++Tp+W +g  g++tL naCG+++r  +l
  Pahal.C00552.1 236 CKHCGSSETPQWSEGAKGPRTLRNACGVRNRQGRL 270
                     *******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.1E-571126IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.85371127IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-872121No hitNo description
Gene3DG3DSA:3.30.50.101.3E-774112IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.9E-1077111IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.95E-6229280No hitNo description
SMARTSM004015.5E-6230280IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.1E-8235267IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.9E-10236270IPR000679Zinc finger, GATA-type
CDDcd002027.84E-8236290No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MTSLSLSEQE RREAARPPVP NGPPGSGESR TQRPAAAATG TDAAVPRGKR SPRARAETPR  60
WGAFRLPAPT PPAATRCQDC GAIETAQWRS GPLGPRTLYN NCGVRRRLAG ERWGKPRPRR  120
PRKAAARAVS DQPPQTEESR LTPESPPDAQ ICEQKLAPAP NLVLVTSPPP ATESLTAQAT  180
ARTGSASDSE QPSPQEIPAS ESSSQQERAK RKSPSPTMEP LPPNNKKNKK TAEKLCKHCG  240
SSETPQWSEG AKGPRTLRNA CGVRNRQGRL LPEYRPQASP TFEAEHASSH SGVLELRRKR  300
KNKQQEPPPP LAQPQPVDDS QDVDLMPQPL PRRVDDIASK LRAGARANND RSASNNAGAP  360
RRTGPVAKRG RIKIHPFLLD GPARPMIVEP EAPC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295302LRRKRKNK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805592.10.0serine/arginine repetitive matrix protein 1-like
TrEMBLA0A2S3H6300.0A0A2S3H630_9POAL; Uncharacterized protein
STRINGSi010259m9e-68(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-21GATA transcription factor 9