PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00551.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 458aa    MW: 49327.1 Da    PI: 10.1913
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00551.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.64.5e-15141172132
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                     C +Cg+ +Tp+WR+gp g+ tLCnaCG++ + 
  Pahal.C00551.3 141 CLQCGAAETPQWRSGPMGSGTLCNACGVRLKA 172
                     89**************************9986 PP
2GATA51.41.5e-16276310135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +Cg+++Tp+WR+gp g +tLCnaCG++yr  +l
  Pahal.C00551.3 276 CLHCGSSSTPQWREGPMGRSTLCNACGVRYRQGRL 310
                     99*****************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.55E-13134181No hitNo description
PROSITE profilePS5011413.231135189IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-12135185IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-13139178IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.29E-10140183No hitNo description
PfamPF003201.2E-12141172IPR000679Zinc finger, GATA-type
PROSITE patternPS003440141166IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-13270329No hitNo description
PROSITE profilePS5011412.651270306IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-15270324IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.1E-14274308IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.97E-13275331No hitNo description
PfamPF003202.3E-14276310IPR000679Zinc finger, GATA-type
PROSITE patternPS003440276301IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MATVEGYKIE PPGLGPRTRR SAATMETGDM AGGGREGERE RPLGYVLSLP AAALPLPVAV  60
SCLDATVPRK ARSRPRLRAQ PCSWWTFELP VPAPEEAKSP ALAANPPRPP RPRPRVCHAP  120
PPDPHTPAPT MERPAKRTRR CLQCGAAETP QWRSGPMGSG TLCNACGVRL KAAGALREQV  180
HRPPPATART VAEPPPESPV SPVSDSSPDG PIWEPGSVPD VYLLRKKPPK QGRSPPARTE  240
AASPPAVFLV KKKKKKKAPK TPKKKPWRPR KSAKRCLHCG SSSTPQWREG PMGRSTLCNA  300
CGVRYRQGRL LPEYRPLASP TFEPSEHANR HSQVIQLHRQ RKSQKSQQPL PTEEPRPVDD  360
PTGALACSGG DDPMNVLLPR RWHNKNEYPP TPLHQPLPQP ADSLAGDQHV GDIDDSAQGR  420
GGGGSNDPND APSSLDSLLL EGPSAPLIVD GDESLID*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250256KKKKKKK
2250264KKKKKKKAPKTPKKK
3251265KKKKKKAPKTPKKKP
4252264KKKKKAPKTPKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805140.10.0pollen-specific leucine-rich repeat extensin-like protein 2
TrEMBLA0A2S3H6860.0A0A2S3H686_9POAL; Uncharacterized protein
STRINGPavir.J37525.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.17e-27GATA transcription factor 4