PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.C00551.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 458aa MW: 49327.1 Da PI: 10.1913 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 46.6 | 4.5e-15 | 141 | 172 | 1 | 32 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 C +Cg+ +Tp+WR+gp g+ tLCnaCG++ + Pahal.C00551.2 141 CLQCGAAETPQWRSGPMGSGTLCNACGVRLKA 172 89**************************9986 PP | |||||||
2 | GATA | 51.4 | 1.5e-16 | 276 | 310 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+++Tp+WR+gp g +tLCnaCG++yr +l Pahal.C00551.2 276 CLHCGSSSTPQWREGPMGRSTLCNACGVRYRQGRL 310 99*****************************9886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 8.55E-13 | 134 | 181 | No hit | No description |
PROSITE profile | PS50114 | 13.231 | 135 | 189 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.5E-12 | 135 | 185 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.2E-13 | 139 | 178 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.29E-10 | 140 | 183 | No hit | No description |
Pfam | PF00320 | 1.2E-12 | 141 | 172 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 141 | 166 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.09E-13 | 270 | 329 | No hit | No description |
PROSITE profile | PS50114 | 12.651 | 270 | 306 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.8E-15 | 270 | 324 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 6.1E-14 | 274 | 308 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.97E-13 | 275 | 331 | No hit | No description |
Pfam | PF00320 | 2.3E-14 | 276 | 310 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 276 | 301 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 458 aa Download sequence Send to blast |
MATVEGYKIE PPGLGPRTRR SAATMETGDM AGGGREGERE RPLGYVLSLP AAALPLPVAV 60 SCLDATVPRK ARSRPRLRAQ PCSWWTFELP VPAPEEAKSP ALAANPPRPP RPRPRVCHAP 120 PPDPHTPAPT MERPAKRTRR CLQCGAAETP QWRSGPMGSG TLCNACGVRL KAAGALREQV 180 HRPPPATART VAEPPPESPV SPVSDSSPDG PIWEPGSVPD VYLLRKKPPK QGRSPPARTE 240 AASPPAVFLV KKKKKKKAPK TPKKKPWRPR KSAKRCLHCG SSSTPQWREG PMGRSTLCNA 300 CGVRYRQGRL LPEYRPLASP TFEPSEHANR HSQVIQLHRQ RKSQKSQQPL PTEEPRPVDD 360 PTGALACSGG DDPMNVLLPR RWHNKNEYPP TPLHQPLPQP ADSLAGDQHV GDIDDSAQGR 420 GGGGSNDPND APSSLDSLLL EGPSAPLIVD GDESLID* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 250 | 256 | KKKKKKK |
2 | 250 | 264 | KKKKKKKAPKTPKKK |
3 | 251 | 265 | KKKKKKAPKTPKKKP |
4 | 252 | 264 | KKKKKAPKTPKKK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805140.1 | 0.0 | pollen-specific leucine-rich repeat extensin-like protein 2 | ||||
TrEMBL | A0A2S3H686 | 0.0 | A0A2S3H686_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J37525.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60530.1 | 7e-27 | GATA transcription factor 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.C00551.2 |