PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00551.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 508aa    MW: 54970.7 Da    PI: 10.9299
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00551.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.55.2e-15191222132
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                     C +Cg+ +Tp+WR+gp g+ tLCnaCG++ + 
  Pahal.C00551.1 191 CLQCGAAETPQWRSGPMGSGTLCNACGVRLKA 222
                     89**************************9986 PP
2GATA51.21.7e-16326360135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +Cg+++Tp+WR+gp g +tLCnaCG++yr  +l
  Pahal.C00551.1 326 CLHCGSSSTPQWREGPMGRSTLCNACGVRYRQGRL 360
                     99*****************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.98E-13184231No hitNo description
SMARTSM004011.5E-12185235IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.231185239IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-13189228IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.49E-10190233No hitNo description
PROSITE patternPS003440191216IPR000679Zinc finger, GATA-type
PfamPF003201.4E-12191222IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.651320356IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-15320374IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.42E-13320379No hitNo description
Gene3DG3DSA:3.30.50.107.0E-14324358IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.45E-13325381No hitNo description
PfamPF003202.6E-14326360IPR000679Zinc finger, GATA-type
PROSITE patternPS003440326351IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MTRHLPALSF LSLCCWRPQP RRSPPARSLT RRRRRLRVPV AARPSAGHGD GGRVQDRAAQ  60
PPGLGPRTRR SAATMETGDM AGGGREGERE RPLGYVLSLP AAALPLPVAV SCLDATVPRK  120
ARSRPRLRAQ PCSWWTFELP VPAPEEAKSP ALAANPPRPP RPRPRVCHAP PPDPHTPAPT  180
MERPAKRTRR CLQCGAAETP QWRSGPMGSG TLCNACGVRL KAAGALREQV HRPPPATART  240
VAEPPPESPV SPVSDSSPDG PIWEPGSVPD VYLLRKKPPK QGRSPPARTE AASPPAVFLV  300
KKKKKKKAPK TPKKKPWRPR KSAKRCLHCG SSSTPQWREG PMGRSTLCNA CGVRYRQGRL  360
LPEYRPLASP TFEPSEHANR HSQVIQLHRQ RKSQKSQQPL PTEEPRPVDD PTGALACSGG  420
DDPMNVLLPR RWHNKNEYPP TPLHQPLPQP ADSLAGDQHV GDIDDSAQGR GGGGSNDPND  480
APSSLDSLLL EGPSAPLIVD GDESLID*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300306KKKKKKK
2300314KKKKKKKAPKTPKKK
3301315KKKKKKAPKTPKKKP
4302314KKKKKAPKTPKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805140.10.0pollen-specific leucine-rich repeat extensin-like protein 2
TrEMBLA0A2S3H6280.0A0A2S3H628_9POAL; Uncharacterized protein
STRINGPavir.J37525.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-26GATA transcription factor 4