PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00545.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 353aa    MW: 36606.4 Da    PI: 5.8707
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00545.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19172221255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++ a+++++g
  Pahal.C00545.1 172 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDGAALRFRG 221
                     8********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.76E-23171231No hitNo description
Gene3DG3DSA:3.30.730.101.4E-32172231IPR001471AP2/ERF domain
PROSITE profilePS5103225.659172229IPR001471AP2/ERF domain
SMARTSM003802.5E-36172235IPR001471AP2/ERF domain
PfamPF008475.2E-13172221IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-22172231IPR016177DNA-binding domain
PRINTSPR003678.5E-12173184IPR001471AP2/ERF domain
PRINTSPR003678.5E-12195211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MCHAAVADSG EQHGRGRLAA GDGGGGDRQQ PLPLDPVVME ATTAALPALS RGRQAREMSA  60
MVAALARVVA GSAPPAKAPH QAVQEASAEE AWWPYDELVA EPSPAFVLDG YGETQPPPEH  120
YWPAVAAETE AATSSQTQYR AASAAAAEEE LPSPSSAGAG ASSGGSAAPR KRYRGVRQRP  180
WGKWAAEIRD PHKAARVWLG TFDTAEAAAR AYDGAALRFR GSRAKLNFPE SATLPFPPPP  240
DPASRALPPP PRPDALLESH SQAPPTGGGM EPYAEYARLL QSAGGDPGGS SGTPSGTLPL  300
PPATYSFAAE GVTPFSYLSP PQSRGEPAGN PAAAWASHYH GSYPPWRWDQ SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22171229463ATERF1
3gcc_A1e-22171229463ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071251e-67AK107125.1 Oryza sativa Japonica Group cDNA clone:002-124-B10, full insert sequence.
GenBankAL7139021e-67AL713902.2 Oryza sativa chromosome 12, . BAC OJ1494_F10 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL8448741e-67AL844874.1 Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-67AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126201e-67CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankCU4063551e-67CU406355.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109D06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808413.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2S3H6F60.0A0A2S3H6F6_9POAL; Uncharacterized protein
STRINGPavir.J04335.1.p1e-137(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-25ethylene response factor 110