PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C00335.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 87aa MW: 9656.95 Da PI: 9.3646

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C00335.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.6e-09	14	53	15	54
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +iN+ +++L++llP+a + ++ s L++++ YIksL Pahal.C00335.1 14 EINELIARLQTLLPSARRRGGSQASTTKLLKETCSYIKSL 53 7************87788888**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.832	1	53	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-10	3	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0084	9	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-9	13	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-6	14	53	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MSSRRSRASV SEEEINELIA RLQTLLPSAR RRGGSQASTT KLLKETCSYI KSLHREVDDL 60 SDRLSDLMAT MDHNSPGAEI IRSLLR*

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}.
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269\|PubMed:23136524}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU958159	1e-116	EU958159.1 Zea mays clone 1675661 DNA binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812655.1	9e-55	transcription factor ILI4
Swissprot	A2X9L8	2e-44	ILI5_ORYSI; Transcription factor ILI5
Swissprot	Q6YUX0	2e-44	ILI5_ORYSJ; Transcription factor ILI5
TrEMBL	A0A2S3HKA1	2e-53	A0A2S3HKA1_9POAL; Uncharacterized protein
TrEMBL	A0A2T7E0Q9	2e-53	A0A2T7E0Q9_9POAL; Uncharacterized protein
TrEMBL	A0A3L6RZZ3	2e-53	A0A3L6RZZ3_PANMI; Transcription factor ILI4-like
STRING	Si007662m	1e-53	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP928	38	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26945.1	3e-26	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.C00335.1