PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00300.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 343aa    MW: 37125.6 Da    PI: 8.262
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.65.2e-23135196259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                     +Dgy+WrKYG K+++g+ f+rsY+rCt++   gC ++k+v+++ ++dp v+++tY+++H+++
  Pahal.C00300.1 135 EDGYEWRKYGEKKINGTSFTRSYFRCTYKddtGCLATKHVQQKdSSDPPVFQVTYNSKHTCN 196
                     7***************************99999*******875268**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-23130196IPR003657WRKY domain
SuperFamilySSF1182907.98E-21130196IPR003657WRKY domain
SMARTSM007742.1E-32134197IPR003657WRKY domain
PROSITE profilePS5081118.211135198IPR003657WRKY domain
PfamPF031062.6E-24135195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDCCVADREH AVEVVVQVYE RIKIQQPLLL VHCSSLPPSA TTQLAQSLLS EALRALNVAL  60
SVMNQQPSPA PATPTSVVVK AERQLLSSSS PSHGAAPDPG EAIPIMARRG KRRRTTVEAG  120
GKTSSWAGLT TVPYEDGYEW RKYGEKKING TSFTRSYFRC TYKDDTGCLA TKHVQQKDSS  180
DPPVFQVTYN SKHTCNNSCT ATAANSSERV ISINPLIING HHHAAVNNVK QEEPPAVLPP  240
LVEASSALAF DQSFPIGMQQ QQQQQQQQQP YGTARDYHGR HTPSTTSSCI SGDSCCDGYY  300
SAGGDIAQQM AADRGSISWR RLSPRSGAFP PVRQLQGLLI TS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805829.10.0WRKY transcription factor 55-like
TrEMBLA0A2S3H5E40.0A0A2S3H5E4_9POAL; Uncharacterized protein
STRINGPavir.Ca00178.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-19WRKY DNA-binding protein 70