PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C00165.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 320aa MW: 34906.7 Da PI: 7.5567 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 68.6 | 9.5e-22 | 109 | 174 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT......EEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk......vveitYegeHnhe 59 Dgy+WrKYGqK+++g+ ++rsYYrCt + gCp+k+ v+r+++ ++ +++Y geH+++ Pahal.C00165.3 109 DGYQWRKYGQKQIEGAMYARSYYRCTRSaeqGCPAKRTVQRNHDGGDgdgtppKYTVVYMGEHTCT 174 9*************************988889**********964322222226899******996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.1E-23 | 94 | 174 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.42E-21 | 102 | 174 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.6E-28 | 107 | 175 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.5E-24 | 109 | 173 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.546 | 109 | 150 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MTLLIGRQGD DELLARLREL LLPSPMTTMI KVDQSGIIIG PPASSRDGRR RRRRESKRGG 60 RDDDSKSSYN GEQQHEEPPR HSCKTRKMKQ RQKKMSSTSS LVTSVPDFDG YQWRKYGQKQ 120 IEGAMYARSY YRCTRSAEQG CPAKRTVQRN HDGGDGDGTP PKYTVVYMGE HTCTANDSME 180 APVILETAAA AVAPVTSTSI KRPQNHDGTA PTTSAGSCSI TSTSTSTATG IESPAISDIT 240 YWSSSSSGDY AVDDYCRLFG VHDSWAPPAT AAASSLQEME DFTGPIRSPV HIATADGWTI 300 DHFLLQLASN DQPVSHFSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-13 | 99 | 173 | 1 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 53 | RDGRRRRRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058620 | 0.0 | KU058620.1 UNVERIFIED: Panicum miliaceum WRKY3-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808247.1 | 0.0 | probable WRKY transcription factor 65 isoform X2 | ||||
TrEMBL | A0A2T8KGK3 | 0.0 | A0A2T8KGK3_9POAL; Uncharacterized protein | ||||
STRING | Si010813m | 1e-95 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66600.1 | 2e-15 | ABA overly sensitive mutant 3 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C00165.3 |