PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B04980.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 372aa MW: 40091.3 Da PI: 7.3717

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B04980.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.5	1.8e-51	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+ +yL++++++ ++++ +i++vdiyk++PwdLp+k+ ++ e+yfFs+rd+ky++g r+nra+ sgyWkatg+dk+++++ Pahal.B04980.1 16 LPPGFRFHPTDEELILHYLRNRAASAPCPV-PIIADVDIYKFDPWDLPSKALYGDGEYYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHDS 109 79**************************.88***********77777899*********************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ge vg+kk Lvfykgr p+g+kt+W+mheyrl Pahal.B04980.1 110 aTGESVGVKKALVFYKGRPPRGTKTNWIMHEYRL 143 88999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-64	6	179	IPR003441	NAC domain
PROSITE profile	PS51005	60.179	16	179	IPR003441	NAC domain
Pfam	PF02365	1.3E-26	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MEMEMISAAQ AATSQLPPGF RFHPTDEELI LHYLRNRAAS APCPVPIIAD VDIYKFDPWD 60 LPSKALYGDG EYYFFSPRDR KYPNGIRPNR AAGSGYWKAT GTDKPIHDSA TGESVGVKKA 120 LVFYKGRPPR GTKTNWIMHE YRLGLAAANP LAAAYRPPSK FRNVSMRLDD WVLCRIYRKS 180 GQASPMVPPL ADYEHLDHDD PSSGGFDDIC SFYAPTSSSG ATTSSTTASS AFIQQQPPAL 240 LLPRLPKIPS ISELLDEYAF AQIFDTAGPA EQDPLAVHPS LNQLLAVGDS AHSDLTIYSP 300 PPVAGGKRKA TSSMGPDECG GMITAGRHQH PPAKSSRLNG SCLDAPQPAS SLPATSSVLG 360 GGLKHHMLPQ F*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MEMEMISAAQ AATSQLPPGF RFHPTDEELI LHYLRNRAAS APCPVPIIAD VDIYKFDPWD  60
LPSKALYGDG EYYFFSPRDR KYPNGIRPNR AAGSGYWKAT GTDKPIHDSA TGESVGVKKA  120
LVFYKGRPPR GTKTNWIMHE YRLGLAAANP LAAAYRPPSK FRNVSMRLDD WVLCRIYRKS  180
GQASPMVPPL ADYEHLDHDD PSSGGFDDIC SFYAPTSSSG ATTSSTTASS AFIQQQPPAL  240
LLPRLPKIPS ISELLDEYAF AQIFDTAGPA EQDPLAVHPS LNQLLAVGDS AHSDLTIYSP  300
PPVAGGKRKA TSSMGPDECG GMITAGRHQH PPAKSSRLNG SCLDAPQPAS SLPATSSVLG  360
GGLKHHMLPQ F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-70	16	184	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-70	16	184	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-70	16	184	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-70	16	184	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-70	16	184	20	173	NAC domain-containing protein 19
3swm_B	1e-70	16	184	20	173	NAC domain-containing protein 19
3swm_C	1e-70	16	184	20	173	NAC domain-containing protein 19
3swm_D	1e-70	16	184	20	173	NAC domain-containing protein 19
3swp_A	1e-70	16	184	20	173	NAC domain-containing protein 19
3swp_B	1e-70	16	184	20	173	NAC domain-containing protein 19
3swp_C	1e-70	16	184	20	173	NAC domain-containing protein 19
3swp_D	1e-70	16	184	20	173	NAC domain-containing protein 19
4dul_A	1e-70	16	184	17	170	NAC domain-containing protein 19
4dul_B	1e-70	16	184	17	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT067914	0.0	BT067914.2 Zea mays full-length cDNA clone ZM_BFc0188L19 mRNA, complete cds.
GenBank	EU971399	0.0	EU971399.1 Zea mays clone 363807 NAC domain transcription factor mRNA, complete cds.
GenBank	KP297932	0.0	KP297932.1 Zea mays Zma1158 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800259.1	0.0	NAC domain-containing protein 48-like
Swissprot	Q8H4S4	6e-83	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A2S3H516	0.0	A0A2S3H516_9POAL; Uncharacterized protein
STRING	Si030267m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1237	36	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	2e-81	NAC-like, activated by AP3/PI

Link Out ? help Back to Top
Phytozome	Pahal.B04980.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]