PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B04544.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 248aa MW: 26660.3 Da PI: 12.6089 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00068 | 99 | 121 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk++++ L H +H Pahal.B04544.1 99 YECSVCGKVYPSYQALGGHKTSH 121 99**********99998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.73E-6 | 96 | 124 | No hit | No description |
PROSITE profile | PS50157 | 10.18 | 99 | 126 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.5E-14 | 99 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 101 | 121 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MSLAMSPDAT LDVSSKPPVP PPSPPRVDSW ARGGRRSKRR AGSPGGGGGA EQSEEEYLAL 60 SLLMLSRGVR GDAAEDSGGV AASAKGAGAA AAKASQQGYE CSVCGKVYPS YQALGGHKTS 120 HRKPQTPPTA RRRRRPRPRR ATSRRPSAPA SRTRRRRCTS ARSASARSRR GRRWAGTSGC 180 TTRAAAPRAR TGSRPTRTPP PRPRPAQPMR LPCSGTSTST CRLRPQRPPR RRWRMPRARF 240 RRPSGRA* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243238 | 0.0 | AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802618.1 | 2e-50 | zinc finger protein 36-like | ||||
TrEMBL | A0A2T7EY28 | 1e-49 | A0A2T7EY28_9POAL; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10028 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 4e-16 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B04544.1 |