PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B04476.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | BES1 | ||||||||
Protein Properties | Length: 325aa MW: 34127.2 Da PI: 8.8129 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 204.2 | 3.8e-63 | 13 | 155 | 2 | 142 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq. 95 g gr+ptwkErEnnkrRERrRRaiaaki++GLRa Gnyklpk++DnneVlkALcreAGwvvedDGttyrkg+kp+ +sp+ss+q Pahal.B04476.1 13 GLGRTPTWKERENNKRRERRRRAIAAKIFTGLRALGNYKLPKHCDNNEVLKALCREAGWVVEDDGTTYRKGCKPP--------PGMMSPCSSSQl 99 679************************************************************************........456789999999 PP DUF822 96 sslkssalaspvesysaspksssfpspssldsislasa.........asllpvlsv 142 +s+ ss+ +sp++sy+asp+sssfpsp++ld s +++ +sllp+l+ Pahal.B04476.1 100 LSAPSSSYPSPAPSYHASPASSSFPSPTRLDPSSGSNThnpgaaaaaSSLLPFLRG 155 99999***************************998876667776666666666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.3E-60 | 14 | 155 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MTSGAAAAAA AGGLGRTPTW KERENNKRRE RRRRAIAAKI FTGLRALGNY KLPKHCDNNE 60 VLKALCREAG WVVEDDGTTY RKGCKPPPGM MSPCSSSQLL SAPSSSYPSP APSYHASPAS 120 SSFPSPTRLD PSSGSNTHNP GAAAAASSLL PFLRGLPNLP PLRVSSSAPV TPPLSSPTAA 180 SRPPTKVRKP DWDAVAVDPF RHPFFAVSAP ASPTRARRRE HPDTIPECDE SDVCSTVDSG 240 RWISFQMSAA TTAPASPTYN LVNPGGGASA SNSMELDGMA AADIGRGGPA EFEFDKGRVT 300 PWEGERIHEV AAEELELTLG VGAK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 8e-28 | 16 | 96 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 8e-28 | 16 | 96 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 8e-28 | 16 | 96 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 8e-28 | 16 | 96 | 372 | 452 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. Mediates downstream brassinosteroid-regulated growth response and feedback inhibition of brassinosteroid biosynthetic genes. May act as transcriptional repressor by binding the brassinosteroid-response element (5'-CGTGCG-3') in the promoter of GRAS32 (AC Q9LWU9), another positive regulator of brassinosteroid signaling (By similarity). {ECO:0000250}. | |||||
UniProt | Positive brassinosteroid-signaling protein. Mediates downstream brassinosteroid-regulated growth response and feedback inhibition of brassinosteroid (BR) biosynthetic genes (PubMed:17699623, PubMed:19220793). May act as transcriptional repressor by binding the brassinosteroid-response element (BREE) (5'-CGTG(T/C)G-3') in the promoter of DLT (AC Q9LWU9), another positive regulator of BR signaling (PubMed:19220793). Acts as transcriptional repressor of LIC, a negative regulator of BR signaling, by binding to the BRRE element of its promoter. BZR1 and LIC play opposite roles in BR signaling and regulation of leaf bending (PubMed:22570626). {ECO:0000269|PubMed:17699623, ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22570626}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00237 | DAP | Transfer from AT1G75080 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:22570626}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969826 | 0.0 | EU969826.1 Zea mays clone 336150 BES1/BZR1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802391.1 | 0.0 | protein BZR1 homolog 1-like | ||||
Swissprot | B8B7S5 | 1e-140 | BZR1_ORYSI; Protein BZR1 homolog 1 | ||||
Swissprot | Q7XI96 | 1e-140 | BZR1_ORYSJ; Protein BZR1 homolog 1 | ||||
TrEMBL | A0A2S3H3M2 | 0.0 | A0A2S3H3M2_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7EXU3 | 0.0 | A0A2T7EXU3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb03208.1.p | 1e-180 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5474 | 34 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50750.1 | 1e-39 | BES1/BZR1 homolog 1 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B04476.1 |
Publications ? help Back to Top | |||
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