PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04382.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 291aa    MW: 32072.2 Da    PI: 8.3364
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04382.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-06262284223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp+C+k F+++ +L+ H  + H
  Pahal.B04382.1 262 VCPKCSKAFRDPVLLVEHVERdH 284
                     7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.15E-12457No hitNo description
Gene3DG3DSA:4.10.1110.101.7E-101050IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.5031059IPR000058Zinc finger, AN1-type
SMARTSM001540.00231352IPR000058Zinc finger, AN1-type
PfamPF014289.1E-141350IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.102.1E-1091147IPR000058Zinc finger, AN1-type
SuperFamilySSF1183107.85E-993141No hitNo description
PROSITE profilePS510397.72898146IPR000058Zinc finger, AN1-type
SMARTSM001540.18101142IPR000058Zinc finger, AN1-type
PfamPF014283.2E-8101139IPR000058Zinc finger, AN1-type
SMARTSM003550.27224247IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226247IPR007087Zinc finger, C2H2
PROSITE profilePS501578.767261289IPR007087Zinc finger, C2H2
SMARTSM003558261284IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGTPEFPNLG KHCSVGDCNQ IDFLPFTCDR CDHVFCLQHR SYTTHQCPNA NMKDVTVLIC  60
PLCAQGVRLN PIEDPNITWD THVNTDCDPS NYQKVTKKQK CPVPGCRETL TFSNTIRCKD  120
CTKEHCLKHR FGPDHKCPGP RTVDSGLPFV NMLRRSQKAE TRPNSSNKNS SSWWSSSLVN  180
AATNFKSSAE AGMQKLSIAT SQAFQKAKDG MSPNSSGSSG GLVEECVHCP ARFSTVGALI  240
EHVEKSHQKN QQPRRGQVTV DVCPKCSKAF RDPVLLVEHV ERDHGGTSRA *
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0412060.0BT041206.1 Zea mays full-length cDNA clone ZM_BFc0188K19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804303.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-168SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A2S3H3B10.0A0A2S3H3B1_9POAL; Uncharacterized protein
STRINGPavir.J03938.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-116C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]