PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04377.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 492aa    MW: 54477.5 Da    PI: 8.2058
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04377.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042371393123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ Cgk  ++ + L  H+r+H
  Pahal.B04377.2 371 YQCKVCGKLLRSEYALGCHMRLH 393
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003557.32244IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-52245IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
SMARTSM0035511083105IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.16283110IPR007087Zinc finger, C2H2
SuperFamilySSF576673.36E-784105No hitNo description
PfamPF139120.09384100IPR007087Zinc finger, C2H2
SuperFamilySSF576673.36E-7288315No hitNo description
PfamPF139121.9E-4292317IPR007087Zinc finger, C2H2
SMARTSM003550.49293315IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598293320IPR007087Zinc finger, C2H2
PROSITE patternPS000280295315IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-4369396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.67E-10369445No hitNo description
PROSITE profilePS5015710.575371398IPR007087Zinc finger, C2H2
SMARTSM003550.056371393IPR015880Zinc finger, C2H2-like
PfamPF139125.9E-6371395IPR007087Zinc finger, C2H2
PROSITE patternPS000280373393IPR007087Zinc finger, C2H2
SMARTSM003550.064423445IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.492423450IPR007087Zinc finger, C2H2
PfamPF139122.6E-7423446IPR007087Zinc finger, C2H2
PROSITE patternPS000280425445IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MDIDEPRTPK PADMRSRGAH KHWCKVCTKN FPSRRALGGH MSCHRFAGMQ PRSTPSPPVI  60
VVDLPVSLLD SSDEKPSLTS LETKCLHCSK EFSTCQSLRG NMQMHSAKKV MTKPDEEPAG  120
LMGASANANG YHGHKVMLFS PVKRKRSKRG MPALDSEEMC AAATLLMLAE YSDKSSAYDN  180
CCRGDNNDNI STPNLLKEVN LNAFDQLSQS DEFLNNTRPK SDKNSAFEGF YDFSEKENNL  240
NLAADVPKKM VLLNVFDDGL VDGDAELMKP GADISVDEVK YGSLSAAVNI KRYQCKVCRK  300
LLRSEYALGC HMRLHCEKEN SLNLVPKKPA QLTVFDHGLD VDAEFMKPGV NNSIEDLKSG  360
DLSAAMNIKS YQCKVCGKLL RSEYALGCHM RLHYAEFMKP GVNNSIEDLK SGDLSAAMNI  420
KSYQCKVCGK LLRSGRALGG HMRLHYVQKC NLDQGVADCP NSAMMEEQMQ KLGLDSPILY  480
RRRPRSLGSE I*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804044.10.0uncharacterized protein LOC112883042
TrEMBLA0A2T8KSC10.0A0A2T8KSC1_9POAL; Uncharacterized protein
STRINGPavir.Ca02545.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.16e-10C2H2-like zinc finger protein