PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04292.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 378aa    MW: 40367.2 Da    PI: 7.2671
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04292.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.6e-13307352655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Pahal.B04292.2 307 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 352
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945301351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-16304364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.94E-13305356No hitNo description
Gene3DG3DSA:4.10.280.102.6E-16306366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-13307357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-10307352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MYGSPVSKDL NLPVQPPMAS SGLLRYRSAP STVLGELCED FLPAGARAAS PDAGADNVFA  60
RFLADHHIRD DKPAPAPAPA AGHFASEADM ASQQQQMMFH SQHQQEMVSA KSGLYRTVSS  120
GMETASAAGA GVGSSNLTRQ SSSPAGFLDH LNMENGYGAM LRAGMSMGFR DGSSAATADS  180
LAGGSSRLKG QFSFSSRQGS LMSQISEMDS EEVGGSSPEA AAGGRGYIPG YTMSSGWEDS  240
STLMSENLSG MKRPRDSLEP GQNGLTHQFS LPKTSSEMAN IEKFLQFQDA VPCKIRAKRG  300
CATHPRSIAE RVRRTKISER IRKLQELVPN MDKQTNTSDM LDLAVDYIKD LQKQVKVLKE  360
SNANCACSVI KNQQHSD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9605911e-168EU960591.1 Zea mays clone 226472 DNA binding protein mRNA, complete cds.
GenBankKJ7277491e-168KJ727749.1 Zea mays clone pUT5690 bHLH transcription factor (bHLH90) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804212.10.0transcription factor bHLH130-like
RefseqXP_025804213.10.0transcription factor bHLH130-like
TrEMBLA0A2S3H3450.0A0A2S3H345_9POAL; Uncharacterized protein
STRINGPavir.Ba00676.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.18e-63bHLH family protein