PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B03864.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 334aa MW: 35752 Da PI: 8.2106 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00078 | 35 | 58 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC+ C+k s+ s + H H Pahal.B03864.3 35 FKCHVCHKKLSTASGMAIHVLQvH 58 89***************9987655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50808 | 10.844 | 6 | 65 | IPR003656 | Zinc finger, BED-type |
SMART | SM00355 | 2.8 | 11 | 34 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 13 | 34 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.1 | 35 | 58 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 37 | 58 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MGKKKKRVEK VFCYYCDREF DDEKILVQHQ KAKHFKCHVC HKKLSTASGM AIHVLQVHKE 60 SVTKVPNAKP DRESTDIEIF GMQGIPAHVL AAHYGEEEDP SAKVAKVEVP QVRPVIMPNS 120 LGMAFPPRPA YGVAPPIYNP ALNPLMARPP IWPTPPAQAW YPQQVAYPQQ PPVSVAPVVA 180 GMPPQQPLFP IQNVPTPMTS APANVLQTSF PMAPPGVPSP VAPQISQPLF PVNTSVVNGA 240 ASSPFVASVA PGTISASSPP AVGYGANNQG TGGPAVGSSP AVSNNKASGT QPATNEVYLV 300 WDDEAMSMEE RRLSLPKYQV HDETSQVSCV FYV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Sequence-specific DNA binding factor that recognizes the 5'-CCAAATTTTAAGTTT-3' sequence. Recruits the FRI-C complex to the FLC promoter. Required for FRI-mediated FLC activation, but has no effect on the expression of MAF1, MAF2, MAF3, MAF5, UFC and CO. Dispensable for the reactivation of FLC in early embryogenesis, but required to maintain high levels of FLC expression in later embryonic and vegetative development. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694, ECO:0000269|PubMed:19121105, ECO:0000269|PubMed:21282526}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by photoperiod or vernalization. {ECO:0000269|PubMed:17079264, ECO:0000269|PubMed:17138694}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037992 | 0.0 | BT037992.1 Zea mays full-length cDNA clone ZM_BFb0206A01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800069.1 | 0.0 | protein SUPPRESSOR OF FRI 4 isoform X3 | ||||
Swissprot | Q9C5G0 | 1e-105 | SUF4_ARATH; Protein SUPPRESSOR OF FRI 4 | ||||
TrEMBL | A0A2S3H270 | 0.0 | A0A2S3H270_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba01662.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30970.1 | 1e-99 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B03864.3 |
Publications ? help Back to Top | |||
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