PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03829.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 335aa    MW: 36070.6 Da    PI: 7.412
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03829.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.91.1e-1223125186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm................rergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                     +W+++ +  L+ea++ ++   +r+klk  +W ++++ +                  +   ++p+qCk+k+e+++kry+++ +   +   + +  +
  Pahal.B03829.2  23 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAREVsahcaddaaaagkppgGGGNSAKTPNQCKNKIESMKKRYRAESAAVARAgPAAAGPS 117
                     5**********************************9999999**********988888899*****************99876666536778889 PP

        trihelix  79 cpyfdqle 86 
                     +++f +++
  Pahal.B03829.2 118 WRFFARMD 125
                     *****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.3E-1421126No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDGLPDADAA PLAAAAPPQK RDEWSESGIV RLLEAYEAKW LLRNRAKLKW SDWVDIAREV  60
SAHCADDAAA AGKPPGGGGN SAKTPNQCKN KIESMKKRYR AESAAVARAG PAAAGPSWRF  120
FARMDGLLKG PAVCSGQVQQ ADLSNSIDLR APAKAEAEVE ADFTAQLTDA GPGVFSDLMN  180
IDTNGAVPEK AEKVDNSVQK ESRAADSDAN VSSPRSKVAN EDAEEVDKVW DRPKKRKSTE  240
FDIAKSIELL ASSYLKIEHA RMEMCRETEK MRVEAEIKKG EMELKRTEIM AKTHLQIAKL  300
FAKRLKEGCG KTGGSSSVTA EVDTHTKKGE NGSG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802935.10.0trihelix transcription factor ASIL1-like
TrEMBLA0A2S3H2130.0A0A2S3H213_9POAL; Uncharacterized protein
STRINGPavir.Ba01421.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.18e-45sequence-specific DNA binding transcription factors