PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B03829.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Trihelix | ||||||||
Protein Properties | Length: 360aa MW: 39313.6 Da PI: 8.5695 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 39.7 | 1.2e-12 | 23 | 125 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm................rergferspkqCkekwenlnkrykkikegekkr.tsessst 78 +W+++ + L+ea++ ++ +r+klk +W ++++ + + ++p+qCk+k+e+++kry+++ + + + + + Pahal.B03829.1 23 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAREVsahcaddaaaagkppgGGGNSAKTPNQCKNKIESMKKRYRAESAAVARAgPAAAGPS 117 5**********************************9999999**********988888899*****************99876666536778889 PP trihelix 79 cpyfdqle 86 +++f +++ Pahal.B03829.1 118 WRFFARMD 125 *****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.3E-14 | 21 | 126 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MDGLPDADAA PLAAAAPPQK RDEWSESGIV RLLEAYEAKW LLRNRAKLKW SDWVDIAREV 60 SAHCADDAAA AGKPPGGGGN SAKTPNQCKN KIESMKKRYR AESAAVARAG PAAAGPSWRF 120 FARMDGLLKG PAVCSGQVQQ ADLSNSIDLR APAKAEAEVE ADFTAQLTDA GPGVFSDLMN 180 IDTNGAVPEK AEKVDNSVQK ESRAADSDAN VSSPRSKVAN EDAEEVDKVW DRPKKRKSTE 240 FDIAKSIELL ASSYLKIEHA RMEMCRETEK MRVEAEIKKG EMELKRTEIM AKTHLQIAKL 300 FAKRLKEGCG KTGGSSSVTA EVDTHTKKGE NGIQISIWMK RNKEFYRFRV MCHSLMLSS* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802935.1 | 0.0 | trihelix transcription factor ASIL1-like | ||||
TrEMBL | A0A2S3H245 | 0.0 | A0A2S3H245_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba01421.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7333 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 2e-44 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B03829.1 |