PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03574.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 400aa    MW: 41558.1 Da    PI: 4.9253
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03574.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.4e-35431342102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++ +++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll++
  Pahal.B03574.1  43 FLTKTYQLVDDPAEDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKRLLCD 128
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  Pahal.B03574.1 129 IHRRKV 134
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.5E-3834127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5739132IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.8E-3540132IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-204366IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3143132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-208193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-2094106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAEQGGATGE AGGSEPPAPA PAPAPPPPMA AEAVGQRSLP TPFLTKTYQL VDDPAEDDVI  60
SWNEDGSTFV VWRPAEFARD LLPKYFKHNN FSSFVRQLNT YGFRKIVPDR WEFANDCFRR  120
GEKRLLCDIH RRKVAPVPAA PGAALATAAA AAASGAVTVA AAPIPMALPV TLPGSPALSS  180
DEQVLSSNSG SAEDHLQAVP SGSGGASASG DTGGENERLR RENARLTREL GQMKKLCNNI  240
LHLMTKYASS QQLDASAALS SVVNCSGESS EAAPPPPPLP PAILDLMPSC PGLATAAAGL  300
VADADPDQAA RLFGVSIGLK RSREEDGTGE EPADHGGSGA EVKTEASDPH QHPSGSSKEA  360
SPDQHPWPIY RPTPVYHSAR PCNGLDQGAG SDQDGSNSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A5e-264313210110Heat shock factor protein 1
5hdn_A5e-264313210110Heat shock factor protein 1
5hdn_B5e-264313210110Heat shock factor protein 1
5hdn_C5e-264313210110Heat shock factor protein 1
5hdn_D5e-264313210110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0986290.0FP098629.1 Phyllostachys edulis cDNA clone: bphylf056i09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802933.10.0heat stress transcription factor B-2c-like
SwissprotQ652B01e-153HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A2S3H1H50.0A0A2S3H1H5_9POAL; Uncharacterized protein
STRINGPavir.Ba01265.1.p0.0(Panicum virgatum)
STRINGSi030094m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.14e-59HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]