PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03526.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 288aa    MW: 30650.5 Da    PI: 5.3807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03526.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.8e-12122167454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  Pahal.B03526.1 122 SHVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 167
                     89************************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.021118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-16120190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9121167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-12121172No hitNo description
Gene3DG3DSA:4.10.280.101.1E-15122181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDDLLSPCSS LSPTSSPSFF SHAGHYPIIE FTSCEVPEQW LLGDVVMAKN EAGYDDGDDL  60
WPVGSSLSPD SELSVQPAPL PQPAPPPQQE QEPSACTVPA AQRPGKRRGR KPGPRPEGPT  120
VSHVEAERQR REKLNRRFCD LRAAVPTVSR MDKASLLADA AAYIAELRAR VARLEAESRR  180
AAAARWEPVV AASCVPPGAP GHGDEAVEVR MLGPDAASVR ATSAAPHAAA RLMGALRSLE  240
LHVQHACVTR VHGLTVQDVV VDVPAQLQDD DGLRAALVQV LQEQDSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-18121177763Transcription factor MYC2
5gnj_B2e-18121177763Transcription factor MYC2
5gnj_E2e-18121177763Transcription factor MYC2
5gnj_F2e-18121177763Transcription factor MYC2
5gnj_G2e-18121177763Transcription factor MYC2
5gnj_I2e-18121177763Transcription factor MYC2
5gnj_M2e-18121177763Transcription factor MYC2
5gnj_N2e-18121177763Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804315.11e-158transcription factor MYC2-like
TrEMBLA0A2S3H1F60.0A0A2S3H1F6_9POAL; Uncharacterized protein
STRINGSi031900m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.14e-16bHLH family protein