PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B03446.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 273aa MW: 29741.4 Da PI: 7.1886

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B03446.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30	9.5e-10	120	167	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+ l+P + +k Ka iL + ++Y++sLq Pahal.B03446.2 120 SHSLAERVRRERISERMRVLQALVPGC----DKVTGKALILDEIINYVQSLQ 167 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.42E-11	114	171	No hit	No description
SuperFamily	SSF47459	2.36E-17	114	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.656	116	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-16	116	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.5E-7	120	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-10	122	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MANFSHLSQH MEHGLANASH GMPSFLFCHG AAAADSASLE TSSGVLDTSP RGTASVDKKI 60 RKPREDSASL SSAQSKDSNS KESTKRRGGK RERSSKEVDE EEEPKGYIHV RARRGQATDS 120 HSLAERVRRE RISERMRVLQ ALVPGCDKVT GKALILDEII NYVQSLQNQV EFLSMRIASL 180 SPVLYGFGID SDAFGDHTQK MEGMLHHEAL AMPASVMNRA PSQAIMHTNT STSSPSYEVH 240 GEGGTGISFP QVCLLFIALY HQTIQLQCTE IS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803717.1	0.0	transcription factor bHLH137-like
Swissprot	Q93W88	3e-51	BH137_ARATH; Transcription factor bHLH137
TrEMBL	A0A2S3H1M2	0.0	A0A2S3H1M2_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EUH4	0.0	A0A2T7EUH4_9POAL; Uncharacterized protein
STRING	Pavir.Ba01554.1.p	1e-177	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	2e-37	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.B03446.2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]