PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.B03437.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 27789.3 Da PI: 11.0762 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 123.3 | 2.2e-38 | 11 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelvv+yL++kv +++l++ vi+ v d+ +++PwdLp a+e e yfFs r+ + t r++r + sgyWk tgkdk+v+ Pahal.B03437.1 11 LPPGFRFHPTDEELVVQYLRRKVLARPLPA-AVIPVVhDVARLDPWDLP---GASEGEGYFFSLRRAPA-T-GRRRR-AGSGYWKVTGKDKPVFL 98 79****************************.8899998***********...3456799****997754.3.46666.589************** PP NAM 95 k....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ lvg+k+ L+f++ + +++++t Wvmheyrl Pahal.B03437.1 99 QcggrRQLLVGVKTALAFHRSEPSSSSRTGWVMHEYRL 136 987655566***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-45 | 7 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.803 | 11 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-24 | 12 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MERPAQAPSQ LPPGFRFHPT DEELVVQYLR RKVLARPLPA AVIPVVHDVA RLDPWDLPGA 60 SEGEGYFFSL RRAPATGRRR RAGSGYWKVT GKDKPVFLQC GGRRQLLVGV KTALAFHRSE 120 PSSSSRTGWV MHEYRLAVPG GVAMAEQRKN ANHARVVEPG EWVVCRVSLK NRPRRSRPNR 180 DGDSKTPGNR TSIAHRAAPL QHREGDGRQP PVSPQPSSSS CVTGVTDISD QDEVSSSSIR 240 IRDAPADSQR EA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-32 | 11 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-32 | 11 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-32 | 11 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-32 | 11 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-31 | 11 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-31 | 11 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-31 | 11 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-31 | 11 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-31 | 11 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-31 | 11 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-31 | 11 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-31 | 11 | 170 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 8e-32 | 11 | 170 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 8e-32 | 11 | 170 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT062533 | 1e-150 | BT062533.1 Zea mays full-length cDNA clone ZM_BFb0310M02 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800656.1 | 0.0 | NAC domain-containing protein 83-like | ||||
Swissprot | O22798 | 8e-49 | NAC41_ARATH; NAC domain-containing protein 41 | ||||
TrEMBL | A0A2S3H165 | 0.0 | A0A2S3H165_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J11699.1.p | 1e-148 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12805 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33480.1 | 8e-45 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.B03437.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|