PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B03219.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 254aa MW: 26005.8 Da PI: 8.8026

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B03219.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.3	7.1e-38	41	98	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +cprC+s++tkfCyynny++sqPr+fC++CrryWtkGG+lrnvPvGgg+rk+ +ss Pahal.B03219.1 41 GDPCPRCESRDTKFCYYNNYNTSQPRHFCRSCRRYWTKGGSLRNVPVGGGTRKSSSSS 98 568**************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-24	41	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.63	42	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.8E-32	43	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MQEPGRRPAP PFAGVDLRRP KGYPAPVPAA EAEEPAPAPA GDPCPRCESR DTKFCYYNNY 60 NTSQPRHFCR SCRRYWTKGG SLRNVPVGGG TRKSSSSSSS SPAPPSPASA TRSTKRSKNS 120 KRRRVSPAPA PDPAPGTDAP AATITSVANT APTPAPETVA AATVAAAEKP AAPGPASTVA 180 ATEKPTAPPA AVSGFTDTST APEVGLADVG SGVGKELPPD PNHFEWPSGC DLGSYWSTGA 240 FADTDPALFL NLP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	124	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005759	4e-88	AP005759.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0556A05.
GenBank	AP014965	4e-88	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	4e-88	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBank	KC996733	4e-88	KC996733.1 Oryza sativa transcription factor Dof25 (Dof25) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802654.1	1e-178	dof zinc finger protein MNB1A-like
Swissprot	P38564	1e-53	MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBL	A0A2S3H0V3	1e-176	A0A2S3H0V3_9POAL; Uncharacterized protein
STRING	Pavir.Ba01771.1.p	1e-112	(Panicum virgatum)
STRING	Si030774m	1e-112	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	6e-28	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Pahal.B03219.1

Publications ? help Back to Top
Yanagisawa S,Izui K Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif. J. Biol. Chem., 1993. 268(21): p. 16028-36 [PMID:8340424]