PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B03065.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 360aa MW: 38291.3 Da PI: 9.3959

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B03065.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.9	5.1e-14	280	330	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L + e+ ++ Pahal.B03065.1 280 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKELNQELERKQAEIMEM 330 79*************************************998777666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-11	276	341	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.806	278	329	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.0E-12	280	331	IPR004827	Basic-leucine zipper domain
CDD	cd14707	8.59E-24	280	332	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.9E-14	280	329	No hit	No description
SuperFamily	SSF57959	2.88E-10	280	328	No hit	No description
PROSITE pattern	PS00036	0	283	298	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MEFKNGGSSS QRRVAVEEGA PLARQGSVYS LTFDEFQSAL GGAAAGGGGG IGKDFGSMNM 60 DELLRNIWNA EETQAMASAS GAGAGAGMPP TTLQRQGSSL TLPRTLSAKT VDEVWRNLVR 120 DEPPQGADGN GQEQAHRQST LGEMTLEEFL VRAGVVRENP APAPAPAPPP MLPPRPVPVA 180 PKSSAFWGNF PGADDAAAAA ALGFAPVGMG DLALGNGLMP PRAASMGGSA MAVQTAVSQL 240 DSGGKGYSDL SSPTEPLPYS FEGMIRGRRN GAGVEKVVER RQRRMIKNRE SAARSRARKQ 300 AYTMELEAEV QKLKELNQEL ERKQAEIMEM QKNEVPEMLK DPFGRKKRVC LRRTLTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MEFKNGGSSS QRRVAVEEGA PLARQGSVYS LTFDEFQSAL GGAAAGGGGG IGKDFGSMNM  60
DELLRNIWNA EETQAMASAS GAGAGAGMPP TTLQRQGSSL TLPRTLSAKT VDEVWRNLVR  120
DEPPQGADGN GQEQAHRQST LGEMTLEEFL VRAGVVRENP APAPAPAPPP MLPPRPVPVA  180
PKSSAFWGNF PGADDAAAAA ALGFAPVGMG DLALGNGLMP PRAASMGGSA MAVQTAVSQL  240
DSGGKGYSDL SSPTEPLPYS FEGMIRGRRN GAGVEKVVER RQRRMIKNRE SAARSRARKQ  300
AYTMELEAEV QKLKELNQEL ERKQAEIMEM QKNEVPEMLK DPFGRKKRVC LRRTLTGPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802824.1	0.0	bZIP transcription factor TRAB1-like
Swissprot	Q6ZDF3	1e-121	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	A0A2S3H026	0.0	A0A2S3H026_9POAL; Uncharacterized protein
TrEMBL	A0A2T7ET33	0.0	A0A2T7ET33_9POAL; Uncharacterized protein
STRING	Pavir.Ba02029.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.1	1e-42	ABRE binding factor 4

Link Out ? help Back to Top
Phytozome	Pahal.B03065.1

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]