PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02776.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 366aa    MW: 37612.3 Da    PI: 8.3993
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02776.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.41.7e-333589558
     ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                     Y+eClkNhAaslGghavDGCgEfmps+g++ +++++lkCaACgCHRnFHRr ve
  Pahal.B02776.1 35 LYRECLKNHAASLGGHAVDGCGEFMPSPGANpADTTSLKCAACGCHRNFHRRMVE 89
                    7***************************************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.9E-283587IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-213686IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.4E-303686IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.2953687IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.48E-16206274IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-28208275IPR009057Homeodomain-like
TIGRFAMsTIGR015654.0E-23216272IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEAMDVKYKP LMFPNGAAVK KVKPAAVAPA AGEPLYRECL KNHAASLGGH AVDGCGEFMP  60
SPGANPADTT SLKCAACGCH RNFHRRMVEG SPPPPAPLAL PAPPVLPSVL HGQRHRGGEE  120
TPDDRLPGAV DDSDSDSDGS EYDEERSVSP PPPPHHVPAP VAQQPPPPPY FPSGPHMLLS  180
LGSGAPGAAV AAAAQRLPPA QLTPSSAPPP GGAMPRKRFR TKFTAEQKQR MQELSERLGW  240
RLQKRDEAIV DEWCRDIGVG KGVFKVWMHN NKHNFLGGHS ARRSASSSAP AGPGAGAPPL  300
HAPTANAGAA APSFNTSAIT PPPPVLTSSP PSASGFNING AASSAPTASA GHPDNVNGAS  360
SPQSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A3e-212162741775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0632440.0BT063244.1 Zea mays full-length cDNA clone ZM_BFc0042E24 mRNA, complete cds.
GenBankEU9637460.0EU963746.1 Zea mays clone 272337 ZF-HD homeobox protein mRNA, complete cds.
GenBankJX4285110.0JX428511.1 Zea mays subsp. mays clone pUT3109 ZHD2 ZF-HD type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799331.10.0zinc-finger homeodomain protein 9-like
SwissprotQ6ER211e-100ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLA0A2S3GZW60.0A0A2S3GZW6_9POAL; Uncharacterized protein
STRINGGRMZM2G161315_P011e-156(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.13e-24zinc finger homeodomain 1