PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B02775.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 90aa MW: 9882.21 Da PI: 8.2099 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 96.9 | 1.5e-30 | 18 | 76 | 1 | 60 |
ZF-HD_dimer 1 kekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +++vrY eC++NhAas+Gg+a+DGC+Ef+++ g egt aalkCaACgCHR+FHRr +++e Pahal.B02775.1 18 CCSVRYGECRRNHAASTGGYAIDGCREFIAE-GVEGTGAALKCAACGCHRSFHRRVQVYE 76 5789**************************8.999********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-25 | 1 | 80 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.4E-29 | 21 | 73 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.7E-23 | 22 | 71 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.396 | 23 | 72 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MKRLLIVRRC EPIVRFSCCS VRYGECRRNH AASTGGYAID GCREFIAEGV EGTGAALKCA 60 ACGCHRSFHR RVQVYEVAWD YGSDTSSTE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799866.1 | 2e-59 | mini zinc finger protein 3-like | ||||
Swissprot | Q6ER22 | 1e-32 | MIF3_ORYSJ; Mini zinc finger protein 2 | ||||
TrEMBL | A0A2S3GZH5 | 4e-58 | A0A2S3GZH5_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7ESA1 | 4e-58 | A0A2T7ESA1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb02187.1.p | 7e-57 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1431 | 34 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74660.1 | 2e-26 | mini zinc finger 1 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B02775.1 |
Publications ? help Back to Top | |||
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