PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B02696.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 454aa MW: 46089.7 Da PI: 7.2181 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.8 | 4.5e-32 | 261 | 314 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Pahal.B02696.1 261 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 314 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.51E-15 | 258 | 315 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-28 | 259 | 315 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 261 | 314 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.4E-7 | 262 | 313 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009887 | Biological Process | organ morphogenesis | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MEASSAASPD LSLHISLPSS APGSGPSGGR ATVGGAGGGG GGAGGDPWRR LNGSTASTEL 60 SLSPPAEQEH EDALPWRHRP SPAAASSAAT TSAGAALMPT MPMQQPLDGG GGGASAAAPI 120 RGIPIYNGPG GFPFLPPAAG GDGGHHQKLG FYGSYHPSTW PSSLGSTSPS PLAPGAPPAP 180 LDPASAFLSP AAHHHHRMLS ASGRLNGMLS DTLRGYGGGG MGGLGGLGGH HHHHHLHGAQ 240 PFGLGSRFMP KLPAKRSMRA PRMRWTSTLH ARFVHAVELL GGHERATPKS VLELMDVKDL 300 TLAHVKSHLQ MYRTVKSTDK PAASSGPNDG GSGDEDFPGA GQAASGGDNM CGARPFGEHR 360 STSEGAASSV GGGDMDQSSA GNTSTRWSNS SRDPWLSSNS CNMDAHRLAG LSSPIENAEP 420 CRSSSSQVSN HELSSPSLEF TLGRPDWQGA DHD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-16 | 262 | 316 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-16 | 262 | 316 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-16 | 262 | 316 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-16 | 262 | 316 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU925398 | 0.0 | EU925398.1 Zea mays milkweed pod1 (mwp1) mRNA, complete cds. | |||
GenBank | EU954667 | 0.0 | EU954667.1 Zea mays clone 1476543 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804688.1 | 0.0 | probable transcription factor RL9 | ||||
Swissprot | Q0J235 | 1e-168 | ROLL9_ORYSJ; Probable transcription factor RL9 | ||||
TrEMBL | A0A2S3GZH9 | 0.0 | A0A2S3GZH9_9POAL; Uncharacterized protein | ||||
STRING | Si032049m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2558 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 3e-61 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B02696.1 |