PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02644.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 298aa    MW: 32176.6 Da    PI: 4.6455
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02644.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17.3e-1990145256
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+++++t+eq++eLe  Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  Pahal.B02644.1  90 RTKRRLTAEQVRELELSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 145
                     77889**************98**********************************9 PP
2HD-ZIP_I/II117.95.6e-3891182292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      krrl++eqv+ LE sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d+++L++a+d+l + +++L +++++Lr+++ 
  Pahal.B02644.1  91 TKRRLTAEQVRELELSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKAKQLEQDFDRLRAAHDELLAGRDALLADNDRLRSQVI 182
                     69****************9999******************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.75E-1781149IPR009057Homeodomain-like
PROSITE profilePS5007117.76786147IPR001356Homeobox domain
SMARTSM003896.7E-1688151IPR001356Homeobox domain
CDDcd000864.75E-1490148No hitNo description
PfamPF000464.5E-1690145IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.5E-1996146IPR009057Homeodomain-like
PRINTSPR000313.1E-6118127IPR000047Helix-turn-helix motif
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PRINTSPR000313.1E-6127143IPR000047Helix-turn-helix motif
PfamPF021831.5E-13147189IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDPGRNMISS AVPFRAAGEG GAQVFLFGGG GGFLRVCRRA GGGAAGAADG WRRKRPFQLT  60
AHEELQLQLE LGDDELAGFD YELHGGPQER TKRRLTAEQV RELELSFEEE KRKLEPERKS  120
ELARRLGIAP RQVAVWFQNR RARWKAKQLE QDFDRLRAAH DELLAGRDAL LADNDRLRSQ  180
VITLTDKLQA KESSVPASAL QAAAYAPFEQ DQLCTETAIT GGAAPAAGYT GGAGDSPESY  240
LASARSPPSS SEDDCGGGDG DGGAFFLPDP DALLAAAAEE DGAQLSNWAW LWNEQQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568501e-107AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804293.11e-150homeobox-leucine zipper protein HOX25-like
SwissprotA3BYC14e-75HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLA0A2T8KQ941e-149A0A2T8KQ94_9POAL; Uncharacterized protein
STRINGPavir.J04192.1.p1e-140(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-30homeobox 1