PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.B01972.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 131aa MW: 14441.8 Da PI: 8.8431 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 9 | 61 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr+++ +g+++AeIrd s + r++lg+f+taeeAa+a+++ + +++g+ Pahal.B01972.1 9 TKYRGVRRRP-WGKYAAEIRDSSR---HgVRIWLGTFDTAEEAARAYDRSAYSMRGA 61 69********.**********432...25*************************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.88E-27 | 9 | 70 | No hit | No description |
Pfam | PF00847 | 2.6E-14 | 9 | 60 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-23 | 10 | 69 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.565 | 10 | 68 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-31 | 10 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-32 | 10 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-12 | 11 | 22 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-12 | 34 | 50 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0010186 | Biological Process | positive regulation of cellular defense response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0090332 | Biological Process | stomatal closure | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 131 aa Download sequence Send to blast |
MDGGEGEPTK YRGVRRRPWG KYAAEIRDSS RHGVRIWLGT FDTAEEAARA YDRSAYSMRG 60 AGAVLNFPED ARVYAAASRG SGSGSSSRQQ QQQQPGGRDV IEFEYLDDEV LQEMLRNHDA 120 DGPSSARKKK * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-37 | 1 | 110 | 1 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00029 | PBM | Transfer from AT5G43410 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727519 | 1e-113 | KJ727519.1 Zea mays clone pUT5378 AP2-EREBP transcription factor (EREB189) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804456.1 | 1e-90 | ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LSX0 | 1e-36 | ERF96_ARATH; Ethylene-responsive transcription factor ERF096 | ||||
TrEMBL | A0A2S3GXV2 | 3e-89 | A0A2S3GXV2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb01308.1.p | 2e-66 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43410.1 | 3e-37 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.B01972.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|