PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B01941.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 587aa MW: 64607.9 Da PI: 7.4576

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B01941.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00069	71	92	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H Pahal.B01941.1 71 KCTKCSREFCSSINFRRHTRVH 92 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.702	70	92	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence Send to blast
MGASRKSSHV TTKDSAETAR DIISTSSQIQ SMKVPDAVAA IAQAAAKANG ETEKYLPGWP 60 LFSPPKVQLD KCTKCSREFC SSINFRRHTR VHRRTLKVDK DFPKNRDHLA AFWNKLTVDE 120 ASTVLSLSNV VVEGVTGSSI LTTLSSWMCK PGYASLPMAY ARAGSELLDL IQTKVSMQLP 180 VSSNELFSVL DEASEKTFLC TNTAACIQKF LFDGEANKIA TELKNVVACA SYMLEQKLVE 240 AWCADKAAEA LRCQKLLVEE EEAAQKRQAE LMERKRMKKL RQKEQRLKDL KDENVTIQLP 300 EIMDDTACSP GIQSFKTISD PDLYEQEKSQ YIEFPAPVTS ETGNGFNVDL SVEDVSCDSA 360 PEMDKGVVLR KQVISRHHLG KTEKLAENSF VSGSAVASKQ AALARPSTYR DANVCCSPNR 420 NKTWARKVPA EIGNQCPKHG LDVDDEHNMA PSKNSRVLIG SISVAIEDGS EHLNDSRSKN 480 DPAPPSSKIV KHASVNVVRL VNHKENRNEG ISNSDGNSAP ADGNRSCFSS MTDESSHSTC 540 RSADFTEGEH LRRTMFSSKE ATSFLSQRWK EAIAADHVKL VLCHDK*

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence Send to blast

MGASRKSSHV TTKDSAETAR DIISTSSQIQ SMKVPDAVAA IAQAAAKANG ETEKYLPGWP  60
LFSPPKVQLD KCTKCSREFC SSINFRRHTR VHRRTLKVDK DFPKNRDHLA AFWNKLTVDE  120
ASTVLSLSNV VVEGVTGSSI LTTLSSWMCK PGYASLPMAY ARAGSELLDL IQTKVSMQLP  180
VSSNELFSVL DEASEKTFLC TNTAACIQKF LFDGEANKIA TELKNVVACA SYMLEQKLVE  240
AWCADKAAEA LRCQKLLVEE EEAAQKRQAE LMERKRMKKL RQKEQRLKDL KDENVTIQLP  300
EIMDDTACSP GIQSFKTISD PDLYEQEKSQ YIEFPAPVTS ETGNGFNVDL SVEDVSCDSA  360
PEMDKGVVLR KQVISRHHLG KTEKLAENSF VSGSAVASKQ AALARPSTYR DANVCCSPNR  420
NKTWARKVPA EIGNQCPKHG LDVDDEHNMA PSKNSRVLIG SISVAIEDGS EHLNDSRSKN  480
DPAPPSSKIV KHASVNVVRL VNHKENRNEG ISNSDGNSAP ADGNRSCFSS MTDESSHSTC  540
RSADFTEGEH LRRTMFSSKE ATSFLSQRWK EAIAADHVKL VLCHDK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	279	ERKRMKKL
2	277	287	KKLRQKEQRLK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799780.1	0.0	uncharacterized protein LOC112879646 isoform X2
TrEMBL	A0A2T8KP27	0.0	A0A2T8KP27_9POAL; Uncharacterized protein
STRING	Pavir.Bb01437.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8503	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	2e-96	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Pahal.B01941.1