PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B01549.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 104aa MW: 10742.8 Da PI: 8.2176

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B01549.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.9e-05	28	50	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H Pahal.B01549.1 28 YECSFCKRGFTNAQALGGHMNIH 50 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.5E-7	27	54	No hit	No description
Pfam	PF13912	7.1E-6	27	52	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.5E-4	28	52	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.009	28	50	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.323	28	55	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	30	50	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
MEGGFNKAGS PEASGEGGTR RAPAGAYYEC SFCKRGFTNA QALGGHMNIH RKDRGGKPGA 60 APPQQDDAGG SRTYGGGDVH LGLSLGRKED VDLELRLGGY PYN*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU947976	2e-81	EU947976.1 Zea mays clone 368057 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799920.1	1e-69	zinc finger protein JAGGED-like
TrEMBL	A0A2S3GXD6	3e-68	A0A2S3GXD6_9POAL; Uncharacterized protein
TrEMBL	A0A2T7ENG2	3e-68	A0A2T7ENG2_9POAL; Uncharacterized protein
TrEMBL	A0A3L6QRR2	3e-68	A0A3L6QRR2_PANMI; Putative transcriptional regulator RABBIT EARS
STRING	Pavir.Ba02387.1.p	2e-68	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6363	32	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	1e-17	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pahal.B01549.1