PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B01396.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 644aa    MW: 70378.2 Da    PI: 6.8958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B01396.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12444490455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h   Er+RR+++N++f  Lr+l+P       +K++ a+iL  ++eY+k+L+
  Pahal.B01396.1 444 SHVLKERQRREKLNERFVVLRSLVPFV-----TKMDRASILGDTIEYVKQLR 490
                     79999*********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.7E-469195IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.653440489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-17443501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-10444489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16444499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-13444494No hitNo description
SMARTSM003531.6E-15446495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MAVGGEAVQK ALQTVAEGTE WTYSVLWKLC PHQGALVWAE GHYNGAIKTR KTTVAPGGNQ  60
EEEDAAAGRR RSRQLRELYD SLAGDAAAAG GRDAVARRPS AALAPEDLTE TEWFYLMCAS  120
YCFPPGIGLP GEAFARRGYV WLCGANKVDS KVFSRAILAR TVACIPVNDD GILEIGTTEK  180
VAEDSGLIQY ARSIFMDQHG IPIMPTLSGH STSTQSTHIN HQPFQIKMEK YAGGINVQPN  240
TLNTEDEHIE TEEEDDRIDS ETNTENGSRR HLPPDNMGNE QARPNARSSD LMQIEASESF  300
RDGCTNHVDD EISMLMICQN AQDQAALAEN AHYIETVLTI LRRNACRRAQ AAPSIRTYLA  360
LSKNSSFSRW NPKGTSDLQL MLISDEGSPQ RMLKSILFIG APARHSHHQM LRGEVQSPEP  420
SRDDGEGTSR SRRGGQGQAE LSASHVLKER QRREKLNERF VVLRSLVPFV TKMDRASILG  480
DTIEYVKQLR RRIQDLESRA RLQIDGGYLT APAPKRAHQS ASSAAAMAET GSNKMRAVEA  540
SSSCSTSGGA VRPAASAAAS TEVQVSIIGS DALVELRCPR RDGLLLRVML TLHRELGLEV  600
ASVQASSAGD VLLVELRAKV REVHGRKSID EVKRAIHLII LSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-1461957192Transcription factor MYC3
4rqw_B1e-1461957192Transcription factor MYC3
4rs9_A1e-1461957192Transcription factor MYC3
4yz6_A1e-1461957192Transcription factor MYC3
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU578996e-43U57899.1 Zea mays repressor-like protein (in1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801359.10.0basic helix-loop-helix protein A
TrEMBLA0A3L6QUZ80.0A0A3L6QUZ8_PANMI; Protein phosphatase 2C 70
STRINGSi029106m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.14e-68bHLH family protein