PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B01266.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | AP2 | ||||||||
Protein Properties | Length: 448aa MW: 47841.7 Da PI: 7.9504 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.1e-17 | 177 | 226 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Pahal.B01266.6 177 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 226 78*******************......55************************998 PP | |||||||
2 | AP2 | 42.8 | 1.3e-13 | 269 | 319 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ +++g Pahal.B01266.6 269 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 319 89********.7******...5...334336**********99**********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.0E-9 | 177 | 226 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-16 | 177 | 235 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.754 | 178 | 234 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-17 | 178 | 234 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.21E-11 | 178 | 233 | No hit | No description |
SMART | SM00380 | 1.8E-30 | 178 | 240 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.60E-26 | 269 | 329 | No hit | No description |
Pfam | PF00847 | 3.2E-9 | 269 | 319 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-17 | 269 | 328 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 16.081 | 270 | 327 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-16 | 270 | 328 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-32 | 270 | 333 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-6 | 271 | 282 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-6 | 309 | 329 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MASPAMPFAP LTSHRAVPFV LGCPPPPWPP PPPRPDAAAA ARLLVEEEAG AGSSSRARSP 60 AGPELGPMVP DLNADSPTPG SASATSSSSG VAGGFFRFDL LGGSPDEEGC SPSPPVVTRQ 120 LFPSPHPDAD ASPPPEPAGP WARRAADLGA SAAAVAAAPS SPAAGKKSRR GPRSRSSQYR 180 GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGLDAD INFHLKDYEA 240 DLKQMKNWTK EEFVHILRRQ STGFARGSSK YRGVTLHKCG RWEARMGQLL GKKYIYLGLF 300 DSEIEAARAY DRAAIRFNGP DAVTNFDSSS YDGDAPLPPE IEKDVVDGDI LDLNLRISQP 360 NVHDPKSDGI LTGFGVNCNS PEASSSIVSQ PISPQWLAHP HSTLVPPQQP HLYASSSPGF 420 FVNLRVNLTP LFSVLSQMQS NAVIITT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT088249 | 0.0 | BT088249.1 Zea mays full-length cDNA clone ZM_BFc0098F06 mRNA, complete cds. | |||
GenBank | EU974186 | 0.0 | EU974186.1 Zea mays clone 442332 floral homeotic protein mRNA, complete cds. | |||
GenBank | FJ686697 | 0.0 | FJ686697.1 Zea mays sister of indeterminate spikelet 1 (sid1) mRNA, partial cds. | |||
GenBank | KJ726939 | 0.0 | KJ726939.1 Zea mays clone pUT3485 AP2-EREBP transcription factor (EREB121) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804503.1 | 0.0 | floral homeotic protein APETALA 2-like isoform X2 | ||||
Swissprot | Q8H443 | 1e-169 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | A0A2T7EMK9 | 0.0 | A0A2T7EMK9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba03394.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-88 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B01266.6 |
Publications ? help Back to Top | |||
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