PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B01160.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 186aa    MW: 19668.1 Da    PI: 4.9549
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B01160.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-162777156
             AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                    + y+GVr +   g+Wv+eIr+       +  r++lg++ t+e+Aa+a++aa+ +l+g+
  Pahal.B01160.1 27 PVYRGVRLR--AGKWVSEIRElR-----KpSRIWLGTYPTPEMAAAAYDAAASALRGA 77
                    68****975..6*********66.....68*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-112776IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-252885IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-172885IPR016177DNA-binding domain
PROSITE profilePS5103218.42884IPR001471AP2/ERF domain
SMARTSM003809.4E-232890IPR001471AP2/ERF domain
CDDcd000182.01E-142986No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEQQRRPEEQ RAAGPCGRRA RAETRHPVYR GVRLRAGKWV SEIRELRKPS RIWLGTYPTP  60
EMAAAAYDAA ASALRGAGAA LNFPDAARSR PAPASASPED VRAAAAEAAA AMDDRLRLRE  120
PRGDGGGGGA DDAVAIVDED DLFEMPRLMM SMAEGLMMSP PALGPAAAAA SMEADEEGVS  180
LWDHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1226841272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796862.11e-125dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI42e-40DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z52e-40DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A2S3IP921e-124A0A2S3IP92_9POAL; Uncharacterized protein
STRINGPavir.Ib02495.1.p7e-83(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-17ERF family protein
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]