PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B01012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 303aa MW: 32995.9 Da PI: 9.4157 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.2 | 2.3e-11 | 142 | 189 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka++L + ++YI+sLq Pahal.B01012.1 142 SHSLAERARREKISERMKVLQDLVPGC----NKVIGKASVLDEIINYIQSLQ 189 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.44E-11 | 136 | 193 | No hit | No description |
SuperFamily | SSF47459 | 2.75E-18 | 136 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.406 | 138 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.2E-19 | 138 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.6E-9 | 142 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-12 | 144 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048446 | Biological Process | petal morphogenesis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MDPASSSVAA ELWRPPHHYL ASGPHHEASS VVTTADRGNG GHSGGGSSRR RPRRDTPAEE 60 EPSKFASTSG AAAGSGSGGQ DSADPEAKRL KQMTSSKSND KIRTEAETNS GNATVEKKHA 120 PPEPPKQDYI HVRARRGQAT DSHSLAERAR REKISERMKV LQDLVPGCNK VIGKASVLDE 180 IINYIQSLQR QVEFLSMKLE AVNAHMNNAT ASFPSKDITI SAQSNLTLFA PVCIFHVLHY 240 GRYLKLYHNI LSVKLQYFGA PAPPYNTAPG LTFDPQTPRE YPQALTSDWL HMQIGSAYER 300 AT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00207 | DAP | Transfer from AT1G59640 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU945706 | 1e-137 | EU945706.1 Zea mays clone 282984 mRNA sequence. | |||
GenBank | KJ727745 | 1e-137 | KJ727745.1 Zea mays clone pUT5686 bHLH transcription factor (bHLH73) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803018.1 | 1e-159 | transcription factor BHLH094-like | ||||
Swissprot | Q69WS3 | 1e-104 | BH094_ORYSJ; Transcription factor BHLH094 | ||||
TrEMBL | A0A2S3GWD1 | 1e-158 | A0A2S3GWD1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb00642.1.p | 1e-140 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3065 | 35 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 5e-59 | BIG PETAL P |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B01012.1 |