PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00895.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 281aa    MW: 29712.7 Da    PI: 6.6074
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00895.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08130174554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Pahal.B00895.1 130 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 174
                     99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.67E-10123179No hitNo description
SuperFamilySSF474595.63E-15123184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.77125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-14127185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-6130174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAGQPPPPGG AEDDFLEHFF AFPSAASAGA GGGHAGAGLH GGDHPFPLAL SLDAAAEASA  60
KQDRDPVQLA GLFPPVFGGG GSVQQPHLRG PPPPQMFHAQ PKPGEGAMAP QPPAPRPKVR  120
ARRGQATDPH SIAERLRRER IAERMRALQE LVPNTNKTDR AAMLDEILDY VKFLRLQVKV  180
LSMSRLGGAG AVAQLVSDIP LSVKGEASDS GSTQQIWEKW STDGTEKQVA KLMEDDIGAA  240
MQFLQSKALC MMPISLAMAI YDTQHTQDGH SLKPEPNTSS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134139RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960750.0FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804227.10.0transcription factor UNE12
SwissprotO227682e-74UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2S3GW170.0A0A2S3GW17_9POAL; Uncharacterized protein
STRINGPavir.Ba03672.1.p1e-178(Panicum virgatum)
STRINGPavir.J03221.1.p1e-178(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-63bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]