PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B00786.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GeBP

Protein Properties

Length: 366aa MW: 38979.9 Da PI: 5.7733

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B00786.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	103.1	2.3e-32	57	156	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifels 92 lfqrlw++eDeiv+L+++ +f+a++g+ +++ d++ fye ++++++ ++k+qlveKirrLK+K++++v++ + g ++f+++h+q ife++ Pahal.B00786.1 57 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLNTGFTKNQLVEKIRRLKRKYRNCVERlRVAGAGFTFRSPHEQAIFEIA 151 79***********************8867778***********************************88899************* PP DUF573 93 kkiWg 97 + iW+ Pahal.B00786.1 152 RTIWR 156 **8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.6E-30	58	155	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MVSSSFPDAD AYGNGDSDDL DFPVDPHPTP VFSSPAAAPA SASAAPPAAG AGERRPLFQR 60 LWTDEDEIVI LRAFAEFTAQ RGTSFASHQY DTTPFYEDMR RRLNTGFTKN QLVEKIRRLK 120 RKYRNCVERL RVAGAGFTFR SPHEQAIFEI ARTIWRPDSD KHGRDSDDEG AANAHDGPLA 180 LDANGESTKS PTSRPRRGGR RRRTGDFPAD AAAETLALPP APMPVMAEDA LPSFPAAGMP 240 AMDAGVGMGG ISMDPAAGLP AAMSAAAAAS AVTGGGTAEN PILAALFKEM VRAMLSIGGG 300 VTAAPLGLEP PPAIAGMPME GEKWRQQRIR ELEVYLRRID LLQDQARAAL EELRSAPQAR 360 GGMNT*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MVSSSFPDAD AYGNGDSDDL DFPVDPHPTP VFSSPAAAPA SASAAPPAAG AGERRPLFQR  60
LWTDEDEIVI LRAFAEFTAQ RGTSFASHQY DTTPFYEDMR RRLNTGFTKN QLVEKIRRLK  120
RKYRNCVERL RVAGAGFTFR SPHEQAIFEI ARTIWRPDSD KHGRDSDDEG AANAHDGPLA  180
LDANGESTKS PTSRPRRGGR RRRTGDFPAD AAAETLALPP APMPVMAEDA LPSFPAAGMP  240
AMDAGVGMGG ISMDPAAGLP AAMSAAAAAS AVTGGGTAEN PILAALFKEM VRAMLSIGGG  300
VTAAPLGLEP PPAIAGMPME GEKWRQQRIR ELEVYLRRID LLQDQARAAL EELRSAPQAR  360
GGMNT*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT064599	0.0	BT064599.1 Zea mays full-length cDNA clone ZM_BFc0188M08 mRNA, complete cds.
GenBank	EU972116	0.0	EU972116.1 Zea mays clone 375368 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794014.1	0.0	probable transcription factor At3g04930
TrEMBL	A0A2T7CC96	0.0	A0A2T7CC96_9POAL; Uncharacterized protein
TrEMBL	A0A2T8I4R3	0.0	A0A2T8I4R3_9POAL; Uncharacterized protein
STRING	Sb01g034370.1	1e-179	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP974	37	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	7e-32	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Pahal.B00786.1