PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B00355.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | YABBY | ||||||||
Protein Properties | Length: 129aa MW: 14576.3 Da PI: 9.7574 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 28.5 | 4.9e-09 | 2 | 24 | 2 | 24 |
YABBY 2 dvfssseqvCyvqCnfCntilav 24 +++++se+vCyv+Cn+Cntil+v Pahal.B00355.2 2 STQFASEHVCYVNCNYCNTILVV 24 67899****************98 PP | |||||||
2 | YABBY | 130.7 | 1.9e-40 | 27 | 118 | 74 | 170 |
YABBY 74 elkvee.enlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 ++++++ +n+ s++ +++ + +++s++++s+n+ p+vpp +rPPekrqrvPsaynrfikeeiqrik+snP+ishreafsaaaknWah+P++h Pahal.B00355.2 27 NRGFHQyNNFGSYEPASR-NLRTQSMYQMSNNQ----PQVPP-MRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLH 115 555444133444444433.34445555666665....44555.8*************************************************** PP YABBY 168 fgl 170 fgl Pahal.B00355.2 116 FGL 118 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.7E-37 | 49 | 118 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 8.38E-9 | 62 | 112 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.6E-6 | 64 | 112 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MSTQFASEHV CYVNCNYCNT ILVVVQNRGF HQYNNFGSYE PASRNLRTQS MYQMSNNQPQ 60 VPPMRPPEKR QRVPSAYNRF IKEEIQRIKT SNPEISHREA FSAAAKNWAH LPRLHFGLSV 120 ADGGGGSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17369428}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963149 | 1e-101 | EU963149.1 Zea mays clone 258350 protein YABBY mRNA, complete cds. | |||
GenBank | EU970658 | 1e-101 | EU970658.1 Zea mays clone 348580 protein YABBY mRNA, complete cds. | |||
GenBank | KJ727990 | 1e-101 | KJ727990.1 Zea mays clone pUT6110 C2C2-YABBY transcription factor (YAB3) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802461.1 | 1e-84 | protein YABBY 1-like | ||||
Swissprot | Q7XIM7 | 4e-63 | YAB1_ORYSJ; Protein YABBY 1 | ||||
TrEMBL | A0A2S3GW41 | 1e-91 | A0A2S3GW41_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba03779.1.p | 4e-82 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-41 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B00355.2 |