PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B00148.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 230aa MW: 24754.3 Da PI: 8.7774 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.9 | 3.6e-16 | 11 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT+eEd l + v+ +G+ +W++I++ ++ gR +k+c++rw ++l Pahal.B00148.1 11 KSAWTKEEDAALREQVRAHGPQNWAAISAALP-GRNPKSCRLRWCQHL 57 579*****************************.***********9986 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.5e-17 | 66 | 108 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde++++++++++++ W+tIa ++ gR+++ +k+rw+++ Pahal.B00148.1 66 PFTPEEDEKIACLHRLYPNK-WATIAGFLP-GRSDNAVKNRWNSV 108 79******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.55 | 6 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-29 | 9 | 105 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-19 | 9 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-16 | 10 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 11 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.10E-15 | 13 | 57 | No hit | No description |
SMART | SM00717 | 2.8E-13 | 63 | 111 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.034 | 65 | 113 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.0E-15 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.09E-13 | 66 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-18 | 66 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MAMPDEAAMK KSAWTKEEDA ALREQVRAHG PQNWAAISAA LPGRNPKSCR LRWCQHLTPV 60 VDAVRPFTPE EDEKIACLHR LYPNKWATIA GFLPGRSDNA VKNRWNSVLG KQPQPQQWAA 120 AAPLRRISDG TLPLFPVASG DVMAFGRSVR VLRRPPPGDA GADLSGACLK LFPLAPGDLV 180 GGNDTSEAGE MDVDRGDDGP TVAELRLWPC TRAASMAAFK AMVQAVRAP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 3e-27 | 11 | 112 | 2 | 102 | MYB3 |
3zqc_D | 3e-27 | 11 | 112 | 2 | 102 | MYB3 |
3zqc_G | 3e-27 | 11 | 112 | 2 | 102 | MYB3 |
3zqc_J | 3e-27 | 11 | 112 | 2 | 102 | MYB3 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798530.1 | 1e-167 | myb-related protein 308-like | ||||
TrEMBL | A0A2T8I5P2 | 1e-164 | A0A2T8I5P2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib00896.1.p | 1e-138 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 1e-36 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B00148.1 |