PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B00107.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 324aa MW: 35180.4 Da PI: 5.8674

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B00107.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.2	1.1e-11	145	192	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ + f L +++P + +K +K++ L +++Y+k+L+ Pahal.B00107.1 145 QEHVIAERKRREKMQQQFVALATIVPDL-----TKTDKISLLGSTIDYVKQLE 192 5799*********************9.....9***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.068	142	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-9	145	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-14	146	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-15	146	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.01E-10	147	196	No hit	No description
SMART	SM00353	8.0E-12	148	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MDELNHQWRS HPDPEEELAY MYGQQEEHAG MQQHFAERLP EQQQYYTPPP PMAAPPRPNP 60 ICPSQPHQGS RFPGFGVPAL PSLPFGGSAV KSDQPGQPSS SSSIFSFGGQ PPSTLNFSGG 120 DWPDGIGAAQ QQVPERRSRA HWNTQEHVIA ERKRREKMQQ QFVALATIVP DLTKTDKISL 180 LGSTIDYVKQ LEEKVKTLEG QSARRTSEPI VFESKCRISN EDSSDASGSS GSAFGAGGFS 240 PTVEASIHGN TILLKICCKE GRGVLVMIIS ELENQGLSII NTSVLPFTDS CLNITITAKI 300 GEGFSTTVEL VRNLTTALRG FST*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	155	ERKRRE
2	151	156	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798093.1	0.0	transcription factor bHLH18-like
TrEMBL	A0A2S3ISN4	0.0	A0A2S3ISN4_9POAL; Uncharacterized protein
STRING	Pavir.Hb01590.1.p	1e-116	(Panicum virgatum)
STRING	OB03G19470.1	1e-116	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6401	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	2e-35	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.B00107.1