PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03939.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 640aa    MW: 69701.8 Da    PI: 4.3615
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03939.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.55.4e-49181541128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratksgyWk 84 
                     l+pGfrFhPtdeelv++yL+++v g++l++ ++i+evd+y++ePwdLp  +++++++ +wyfF++ d+k a          g+r+nrat +gyWk
  Pahal.A03939.1  18 LAPGFRFHPTDEELVSYYLRRRVLGRRLRV-DAIAEVDLYRLEPWDLPslSRIRSRDAQWYFFARLDRKVAgagaggrggPGNRTNRATPRGYWK 111
                     579***************************.99***************5448999999***********99877777665577************ PP

             NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +tgkd+ev++ +g++vg+kktLvf+ grapkge+++Wvmheyrl
  Pahal.A03939.1 112 TTGKDREVYH-RGKAVGMKKTLVFHAGRAPKGERSNWVMHEYRL 154
                     **********.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5513172IPR003441NAC domain
PROSITE profilePS5100555.49818172IPR003441NAC domain
PfamPF023658.0E-2720154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MSSSLSPLDA SPAAEVPLAP GFRFHPTDEE LVSYYLRRRV LGRRLRVDAI AEVDLYRLEP  60
WDLPSLSRIR SRDAQWYFFA RLDRKVAGAG AGGRGGPGNR TNRATPRGYW KTTGKDREVY  120
HRGKAVGMKK TLVFHAGRAP KGERSNWVMH EYRLLDADGP QDLHVVCRIF QKHGSGPQNG  180
AQYGAPYMEE EWEEEDDAIE NAPASGTSAG MATNTCTVDE ESNEEDENGY CKTNELAQAH  240
GMLSSPEMAP LKDQGSKDTS EGSCADGVIS LEEIIQEPLS TINAENIGRS EGQNATDDNF  300
SVDDLLSACP RKDNDYVGQD GTLNGSYPAD GDYNTHWPLR AYSNQNYANG TLSAEEFFDT  360
QNDSNGNTYS EYQQADGFPA PHQVDGSMVF YDAPSDYNLV DGNDDFVYLN DLLNEPLGNE  420
SLFDGNDMMA YFDATENDFK YDILGSAQGS NYQLADMPSD FAQKGDNKDK FALDGISKPS  480
EANAQYGASS SGSHKDLYPD TAVPDDTVDK TFGKRLASML GSIPAPPAMA SEPSAAGKSV  540
GALSAVSPSS IRVTAGIIQL DGLTFTGVSE RWPLQKNGDF SLLLSFTVES DVLSKPVGFE  600
QATRMSTIPM VLRSGMYLFF VSAMILLLSY KVGSCICSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-441415411140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817703.10.0NAC domain-containing protein 53-like
TrEMBLA0A2S3GUQ20.0A0A2S3GUQ2_9POAL; Uncharacterized protein
STRINGPavir.Ab03009.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129312833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.15e-62NAC domain containing protein 2