PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A03926.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 199aa MW: 20566.3 Da PI: 6.7086 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.3e-05 | 47 | 69 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C + F++ L H+++H Pahal.A03926.1 47 YKCTFCRRGFPTAQALGGHMNVH 69 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.7E-6 | 44 | 73 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.8E-4 | 45 | 71 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.533 | 47 | 74 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0061 | 47 | 69 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 6.9E-6 | 47 | 71 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MDLSQETKDE ASPSGEAHED DKELQKQRAG SSGGGGDDDD EGTRQPYKCT FCRRGFPTAQ 60 ALGGHMNVHR RHRGRSSAAP TTGAAAAQGI SSGRSGCYEQ QPCYSTMATT VVAFGGQTHP 120 ASVASMAAGG AALLHAERHQ QPYELRLFGR DCAAGGRGKE GGAGDVRRDR CYAKDGDGGD 180 HGGAEKLDLE LRLGGAGS* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971833 | 8e-52 | EU971833.1 Zea mays clone 371263 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823363.1 | 1e-140 | zinc finger protein 6-like | ||||
TrEMBL | A0A2S3GV00 | 1e-139 | A0A2S3GV00_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J13026.1.p | 4e-79 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14547 | 22 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 6e-11 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A03926.1 |