PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03765.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 341aa    MW: 35659.7 Da    PI: 7.2373
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03765.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44e-18257290134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  Pahal.A03765.2 257 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 290
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.55E-15249313No hitNo description
SMARTSM004011.7E-15251301IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.147251287IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-14255288IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.64E-14256313No hitNo description
PfamPF003208.8E-16257290IPR000679Zinc finger, GATA-type
PROSITE patternPS003440257282IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MALPPPAAQD DAAAFFAAAG APVFDAKDVG GHIGPCDDLD MDMAQLEWLS GLFDDASIPH  60
EPAFPGASCA APIKSSALAA NAGVALLPPD KMEDALFRSS SPISVLEHNS FNANNNVGSA  120
SSSSSSASSS SESFSGSGGH AWSAPVSPRP EPPVLVIPAR ARSKRSRPSA FTGAARAAEA  180
PTILVPTPMY SSTSSHSDPE SIAESNPHQA PPKKKKKAKK PAPPAPTASD AEGDNDGDAD  240
YEEGGERSQP QGTVRRCTHC QIEKTPQWRA GPLGPKTLCN ACGVRYKSGR LFPEYRPAAS  300
PTFVPSIHSN SHKKVVEMRQ KAVRSGDPSC DLLQFIRRRD *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807686.10.0GATA transcription factor 8-like
RefseqXP_025807694.10.0GATA transcription factor 8-like
TrEMBLA0A2T8KYD80.0A0A2T8KYD8_9POAL; Uncharacterized protein
STRINGSi017314m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.24e-38GATA family protein