PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03503.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 336aa    MW: 35317.1 Da    PI: 6.5075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03503.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-13124175155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +rr+h ++Er+RR+++N+ ++ Lr+++P++   ++++ + a+i+  A++++k+L+
  Pahal.A03503.1 124 QRRNHIAVERNRRRQMNEYLAVLRSVMPPS---YAQRGDQASIVAGAINFVKELE 175
                     79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.77E-14122179No hitNo description
SuperFamilySSF474595.63E-17122191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.561123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-11124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-14124186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-10129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MALEAVVFPM EHLACTAKAD SASLGCGFDI DDLEEKGGVV LQVEAAGALP LGDGAATAWD  60
AALCPCSVAP GALEECWDAQ RHLSVSPPPV PAPPGGRGKA TASAARRRRR RPKAVKNTEE  120
MESQRRNHIA VERNRRRQMN EYLAVLRSVM PPSYAQRGDQ ASIVAGAINF VKELEQLLQS  180
LEAQKRRAGC AEPPAAPPFA GFFTFPQYST GATGAVGASD SSGSAGGDQS GGGCAGARRG  240
VADIEVAVAE SHANVKVLAP RRPRQLLRMV VALQCLGLTV LHLYVTTTAD HLAFYSFSLK  300
MEDECRLSSV DDIAAAVNEI VAKVSDEVII SQLAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110RRRRRR
2125135RNHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605120.0BT060512.1 Zea mays full-length cDNA clone ZM_BFb0009D23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828341.10.0transcription factor bHLH94-like
TrEMBLA0A2S3GTD70.0A0A2S3GTD7_9POAL; Uncharacterized protein
STRINGPavir.Aa00538.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.11e-42bHLH family protein